Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1934 ATGTCAACGAAGGAAGAATCTCAAATTTCCCAACATTCTTCCAATAACAATCAATCCAAACCCAACAAGCGCCTTCATGCTGATTCCAGCAAGCACCCAATGTATCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCCCGCATTTGGCTCGGGACTTTCCCCACCCCTGAAATGGCCGCTCGAGCCCACGACGTTGCTGCCTTGTCCATTAAAGGTAATTCCGCCATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAGGCCGCCCATATGGACCCTAATTTCCTCCACTACTCTCCTAATTCCCCTGTTTCCACTTCCCCCTCCCCCTCCTCCGCCGCCGACGAGGACTCCGACGAACTCACCGAAATCGTCAAACTCCCTACTCTCGGCTCCAACTACGATCACTTCATCTCTAACAACGAGTTCGTGCTGATGGACTCGACGGAGGGATGGGTTTATCCCCCGCCTTGGTTACGAACCATGGAGGATTGCGGCTACAATACCAACAATATTATTGACGATTTGGGAATTGGGGTTGGGGATAGTAATTGCTTATGGGATTATTAA 651 53.0 MSTKEESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSSAADEDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNTNNIIDDLGIGVGDSNCLWDY 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31117500 31118150 - CrPI670011_11g019340.1 Cre11g1934 513679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1934 216 MobiDBLite consensus disorder prediction 125 142 - -
Cre11g1934 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 174 IPR051032 -
Cre11g1934 216 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1934 216 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1934 216 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677(InterPro)
Cre11g1934 216 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1934 216 MobiDBLite consensus disorder prediction 124 147 - -
Cre11g1934 216 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1934 216 Pfam AP2 domain 34 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1934 216 CDD AP2 35 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1934 216 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Cre11g1934 216 SMART rav1_2 34 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1934 216 MobiDBLite consensus disorder prediction 1 23 - -
Cre11g1934 216 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1719 Cre-Chr6:14667212 Cre11g1934 Cre-Chr11:31117500 9.20E-48 dispersed
Cre08g0161 Cre-Chr8:3693189 Cre11g1934 Cre-Chr11:31117500 2.40E-22 dispersed
Cre09g0167 Cre-Chr9:1934111 Cre11g1934 Cre-Chr11:31117500 7.70E-42 dispersed
Cre10g2039 Cre-Chr10:35103610 Cre11g1934 Cre-Chr11:31117500 2.80E-23 dispersed
Cre10g2040 Cre-Chr10:35113019 Cre11g1934 Cre-Chr11:31117500 1.40E-26 dispersed
Cre11g0713 Cre-Chr11:4246311 Cre11g1934 Cre-Chr11:31117500 4.50E-39 dispersed
Cre11g1934 Cre-Chr11:31117500 Cre11g1979 Cre-Chr11:31541295 6.80E-20 dispersed
Cre06g1012 Cre-Chr6:3752157 Cre11g1934 Cre-Chr11:31117500 7.40E-34 transposed
Cre10g0498 Cre-Chr10:4143869 Cre11g1934 Cre-Chr11:31117500 8.40E-37 transposed
Cre11g1934 Cre-Chr11:31117500 Cre08g1165 Cre-Chr8:24893628 1.40E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54721 PF00847 AP2 8.00E-14 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1934 K09286 - csv:101217333 276.944