Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1949 ATGCAATTGGATTCGTTAAGGCTCTTTTCTGGTCCTCAGAAAAAGAAAACAATATATATCAGTAAAGCAACCAAAAGTGATAAATTGACAGTAAAAATGAGTGACAAGAGAGAGAATTCAGCTGATGAGGAAGTTGAAACAAAAGAGATGGATGATAGAAGTTTGACTCCAGATAATCAACCACAGGATGAGCGATACATTCACAAAGTTGGGGTTCCACCCAAGCAAAAACTCTACAAAGAAATCAAATCTGCAGTGAAAGAAACATTTTTCCCGGATGATCCTCTCCGTTCATTCAAGGATCAAACTAAGAGGCGGAAATTTATTCTCGGGGTCCAAGCCGTTTTTCCGATTCTTGATTGGGGAAGAACTTATAATTTGACTAAGTTTAGAGGAGATGTTATTTCTGGATTAACAATTGCTAGTCTTTGCATTCCACAGGATATTGGGTATGCCAAGCTTGCGAATTTGCCTCCAGAGTACGGTTTGTACTCCAGTTTTGTTCCACCATTAATCTATGCACTTATGGGTAGCTCAAGAGATATAGCCATTGGTCCAGTTGCTGTTGTTTCTCTCTTGTTGGGGACGCTGCTTCAAGCGGAAATCGATTCTGCTGCGAATCCAGAAGACTACAGGCGGCTGGCATTTACAGCTACATTCTTTGCGGGGATCACACAAGCCACCCTTGGAGTTCTGAGGTTGGGATTCCTTATTGACTTCTTGTCCCATGCTGCCATTGTTGGCTTCATGGGTGGAGCTGCCATCACCATTGCTCTCCAACAACTCAAAGGCTTTCTTGGCATCAAGAAATTCACAAAGAAAACAGATATTATCTCTGTTATGCAGTCAGTATTTGGCACAATCCAACACGGATGGAACTGGCAGACAATAGTGATTGCTGTAGCCTTCCTTGGCTTCCTTCTATTTGCAAAATTCATTGGGAAGAAGAACAAGAGGCTCTTCTGGGTGCCTGCAATTGCTCCACTTATATCTGTTGTACTGTCTACCATTTTGGTATACATCACTCGTGCAGATAAGGAAGGAGTTGCAATTGTGAAACACATAGAGAAAGGAATCAATCCCCCATCTGTGAAAGACTTATATTTATCAGGCCAATACCTTCCAAAAGGGTTGAAGATCGGTATTGTGGCGGGAATGGTAGCACTGACGGAAGCCGTTGCAATTGGAAGAACGTTTGCTTCAATGAAAGACTATCAAATAGATGGGAACAAGGAAATGGTAGCAATGGGACTCATGAATGTTGTTGGTTCAATGACTTCCTGCTATGTAACAACAGGATCATTCTCTAGATCCGCCGTAAATTACATGGCTGGCTGCCAAACTGCAGTCTCCAACATTGTGATGTCTATTGTAGTACTCCTAACTTTGGCATTCCTCACCCCATTGTTCAAATATACTCCAAATGCAATTCTGTCCGCTATCATCATATCCGCTGTGATCAACCTGGTCGACTTGCATGCCGCGAAACTGATTTGGAAGATAGATAAATTCGATTTTGTTGCTTGTATGGGAGCCTTCCTTGGTGTCATCTTTTTCTCTGTTGAGATAGGCCTTCTTATTGCGGTATCCATTTCCTTCGCCAAAATCCTTCTACAAGTTACCAGGCCAAGGACTGCAATTCTTGGAAAGATCCCTAGGACGACTGTTTACCGAAACATACTGCAATATCCTGAAGCAACCCAGGTTCCAGGGGTTTTGATTGTGAGAGTTGATTCGGCAATTTACTTTTCCAACTCCAATTACATCAAGGAAAGGATATTGAGATGGCTGGTTGATGAGGAAGAACAAACGAAAAAGTTATACCAGAACAAAATCCAGTTTCTAATAGTTGAAATGTCACCTGTTACTGACATAGACACTAGTGGCATACATGCTTTGGAAGAGCTAAATGGGAGTCTCAAGAAGAGAGAAATTCAGCTCATTTTAGCAAATCCGGGGCCCGTGGTGATCAACAAACTCCACGCATCGGAATTTGTAGATTTGATAGGCCAAGACCATATCTTCCTCACAGTTGCAGATGCAGTCTCATCTTGTAGTCCAAAGATAATGAACGACGTTTGA 2082 42.07 MQLDSLRLFSGPQKKKTIYISKATKSDKLTVKMSDKRENSADEEVETKEMDDRSLTPDNQPQDERYIHKVGVPPKQKLYKEIKSAVKETFFPDDPLRSFKDQTKRRKFILGVQAVFPILDWGRTYNLTKFRGDVISGLTIASLCIPQDIGYAKLANLPPEYGLYSSFVPPLIYALMGSSRDIAIGPVAVVSLLLGTLLQAEIDSAANPEDYRRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKKTDIISVMQSVFGTIQHGWNWQTIVIAVAFLGFLLFAKFIGKKNKRLFWVPAIAPLISVVLSTILVYITRADKEGVAIVKHIEKGINPPSVKDLYLSGQYLPKGLKIGIVAGMVALTEAVAIGRTFASMKDYQIDGNKEMVAMGLMNVVGSMTSCYVTTGSFSRSAVNYMAGCQTAVSNIVMSIVVLLTLAFLTPLFKYTPNAILSAIIISAVINLVDLHAAKLIWKIDKFDFVACMGAFLGVIFFSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNILQYPEATQVPGVLIVRVDSAIYFSNSNYIKERILRWLVDEEEQTKKLYQNKIQFLIVEMSPVTDIDTSGIHALEELNGSLKKREIQLILANPGPVVINKLHASEFVDLIGQDHIFLTVADAVSSCSPKIMNDV 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31287786 31291491 + CrPI670011_11g019490.1 Cre11g1949 513694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1949 693 NCBIfam sulfate permease 117 681 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre11g1949 693 Pfam Sulfate permease family 130 511 IPR011547 GO:0016020(InterPro)
Cre11g1949 693 CDD STAS_SulP_like_sulfate_transporter 563 678 - -
Cre11g1949 693 ProSiteProfiles STAS domain profile. 562 685 IPR002645 -
Cre11g1949 693 Gene3D STAS domain 542 688 IPR036513 -
Cre11g1949 693 Coils Coil 598 618 - -
Cre11g1949 693 PANTHER SULFATE TRANSPORTER 86 685 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre11g1949 693 FunFam Sulfate transporter 31 542 688 - -
Cre11g1949 693 Pfam STAS domain 563 681 IPR002645 -
Cre11g1949 693 ProSitePatterns SLC26A transporters signature. 159 180 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cre11g1949 693 MobiDBLite consensus disorder prediction 31 64 - -
Cre11g1949 693 SUPERFAMILY SpoIIaa-like 564 686 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1189 Cre-Chr3:12746868 Cre11g1949 Cre-Chr11:31287786 6.30E-303 dispersed
Cre07g1311 Cre-Chr7:27497846 Cre11g1949 Cre-Chr11:31287786 6.10E-181 dispersed
Cre09g0691 Cre-Chr9:6600917 Cre11g1949 Cre-Chr11:31287786 8.00E-205 dispersed
Cre11g0620 Cre-Chr11:3312001 Cre11g1949 Cre-Chr11:31287786 9.20E-183 dispersed
Cre01g0452 Cre-Chr1:3835069 Cre11g1949 Cre-Chr11:31287786 8.80E-109 transposed
Cre09g1526 Cre-Chr9:30768953 Cre11g1949 Cre-Chr11:31287786 4.70E-250 transposed
Cre11g1949 Cre-Chr11:31287786 Cre03g1187 Cre-Chr3:12698964 3.70E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1949 K17470 - csv:101207370 1197.57