Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1954 ATGGCAGCAGCCATGGATTTCTACAATGAAGGACCACAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCTCTCTCTACAAATTTCCCATCTTCTTCTTCTTCTTCTTCACCAACACCTAATCTCCTCCCTCCTTATTCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCACTCAACCCCTCAACAGTCCAGTTTGTACTCAAATGGCTGCTCCACTTCGATGAACTCAGTATTTTCAGATGGGTTCTCGAACCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCGCATCAATTATCATCACCTCAAATCCCCCATTCCCAAACTCAATTCAATCTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGGCAACAAAACCATCAACCACCATCCTGCTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCTATTCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTATAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCAGAGATCCGACTCCCAAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCTAGACTTAATTTCCCCAATCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGCGAGTACAAGCCTCTACATTCCTCAGTAGCTGCAAAGCTCCAAGCAATTTGTGAAAACTTGGCCAAGCCGCAGAAACAAGGCAAGTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCGTGCTCCACGGCCGCGGGAACAGCAGCTGTGAAGGTGGAGAACTCCTCGTCACGAGCTGTCACAGAGAGTGACGGGTCTGCAGCATCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCGGAGATTGATTGGGCATCGATCTTACCTTAA 1092 47.71 MAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSLSTNFPSSSSSSSPTPNLLPPYSSSFNSHLNFSHSTPQQSSLYSNGCSTSMNSVFSDGFSNQNLIGFEQPFTIGPHQLSSPQIPHSQTQFNLLQNQTPLAFAWGQQNHQPPSCYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYKPLHSSVAAKLQAICENLAKPQKQGKSKKPVTAAKKSRSQSCSTAAGTAAVKVENSSSRAVTESDGSAASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31358313 31359404 + CrPI670011_11g019540.1 Cre11g1954 513699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1954 363 PRINTS Ethylene responsive element binding protein signature 180 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1954 363 PRINTS Ethylene responsive element binding protein signature 202 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1954 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 361 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cre11g1954 363 SMART rav1_2 179 242 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1954 363 CDD AP2 178 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1954 363 MobiDBLite consensus disorder prediction 296 326 - -
Cre11g1954 363 ProSiteProfiles AP2/ERF domain profile. 179 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1954 363 FunFam Ethylene-responsive transcription factor 2 178 237 - -
Cre11g1954 363 Gene3D AP2/ERF domain 179 237 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1954 363 Pfam AP2 domain 179 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1954 363 SUPERFAMILY DNA-binding domain 179 236 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0452 Cre-Chr2:1783392 Cre11g1954 Cre-Chr11:31358313 9.70E-28 dispersed
Cre02g2061 Cre-Chr2:34121137 Cre11g1954 Cre-Chr11:31358313 2.10E-27 dispersed
Cre04g1510 Cre-Chr4:33815584 Cre11g1954 Cre-Chr11:31358313 1.70E-61 dispersed
Cre08g1034 Cre-Chr8:23503288 Cre11g1954 Cre-Chr11:31358313 2.30E-92 dispersed
Cre09g2319 Cre-Chr9:42441323 Cre11g1954 Cre-Chr11:31358313 2.80E-27 dispersed
Cre11g1080 Cre-Chr11:8259520 Cre11g1954 Cre-Chr11:31358313 3.40E-20 dispersed
Cre06g1562 Cre-Chr6:10812133 Cre11g1954 Cre-Chr11:31358313 5.40E-29 transposed
Cre11g1954 Cre-Chr11:31358313 Cre08g0494 Cre-Chr8:17119327 6.40E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54722 PF00847 AP2 2.80E-15 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1954 K09286 - csv:101214560 611.298