Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1991 ATGGTTCTTCGGCTTGTACCTGCCTCATGGGCTTGGGCTCACCTAGGGCGAACTCTAATAGCGGCAACGGATCGTCGTCGAAAATTCCGGATTTCCTTTCGTGTTCGATCACCAACCGGCGGAACTAGTGCTTGTTTTTTCTTATCGGAGTCTATTTCATCGGCGGCGAGTGATTTGGTTGCGCTCTGCGCATTCCGATTCGTTGATCAACATCGTAAGTATCTCATCCAGATGAAAACTGCTGATGCATCTTTGTTCAGCATGTTCTTCAAACATAAGGATAAAGGTTCTACATCCAATGATGAGTCAGAGGACCTTGGTGATGTTCTTGACAGTGAGGTGAACTCTTACCTAAACAATAGGAAGGAGACACATTATAAAAAGATTATTTGGGAGCAAATTAACAAAGACTATCTTCAGGACCAAGCAGCTAAGAAACTAGGTCGTGATATTGTTGGAGCTGCAGCTGTGGTTAAAAAATCAAAGAAGAGGCAAAGGAAAAAAGAGGCTCCTATAAACAACCCTGCTCAAGCCGATACAGAAGCTTCGCTTGAAATGCTTACTAAGAAGAGGCTCAGTTCAAAATTCAACTTCGACGTGTTGGACAAGCTCTTCTCTGATACACCTGCACCTGATTCAAGCGAAAAGCAGGGAGTCTCAAGTTGTAAAGAAAATAGTTCATTGAAACAAAGCCATCAAAGCCATTGTAGTTACCAGCTTGAAGACGACCTTGAAGACAATCATGCGGACACAATGTTTGAAGAAAACATCGACATTGAAGGTGAAGATCCCACAGAAACTTATGGTAATGAGTATTATGATTTCGAAAACGAGGAAGAGTATGGCTATGGATACGATTTAGGAAACTGCAAAGTCAATGCTTCTCTTTTTCTTTCCTCTCTTGGAAGGAGAGCATTGGGCAAAAGTTCATTAAAGAAGAAAGAAAACCATAAGTTGATCATTCTCCAAGGGAAGTATCCATTGCACACTCATGGCTTCAGATTATGCGTTGAAGGTCCCTGCCGAACTAGAATCAGCTTTGCGGTTAAAGACTGTTCAGTACTTCATTACAAAAAGGCCGTGGCTTGGTGTTGTATTTCAGATCTCTATGGGGTTAATGTTAGACCCGTTGCGCCATTTGGAAGTTCGAGTCGGCAGCCATTTGTTGATCCAGCATTAATACATCGCAGCTTGCCAGATGAGTTATTGTTTGAGGTCTTTGCCAGAATGGCTCCTTATGACCTGGGACGGGCATCGTGTGTCTGTCGAAAATGGAGATATACTATTCGGAATCCTGTATTCTGGCGTAGTGCTTGTTTGAAGGCTTGGCAGCTCTCTGGTGTGGTTGAAAACTACAAGTTTTTGCAGTCTATGTATGATGGATCATGGAGAAAAATGTGGCTTTTACGACCAAGGATCCGCACTGATGGCCTTTATGTTAGCAGGAATACTTATATACGTGCTGGGATTGCAGAGTGGAAGATTACCAATCCAGTTCACCTGGTCTGCTATTTCCGTTACATCAGATTTTTTCCTTCTGGGCGGTTTCTCTACAAGAATTCTTCACAGAAGATTAAGGATGTGGCTAAGTGCATGAATTTTCGTGCTTCGAAAGCTGACTGTATTTTTGGTGGACACTATACCTTGTCAGATGATAAGGTTGAAGCAGCTGTTTTGTACCCAGGTGCTCGTCCTACTGTGCTCAGAATCCGGATGAGGCTAAGAGGAACGTCAACAGGGGCTAATAACCGAATGGATCTATTAACCCTTGTTACCAGTGGTATGAATAACAATGAGGTTGGTGATCCTGAAGAAGATATCCTTGGCATAGTGGAAAGGTGGCGAGACGATGAAACACACAACCCGGACGTGCCTGCAGTTTCTCATAAGCGGGGTCTGACACCTTTTATATTTGTTCCTTTTGATCAGGTGGAAACATCAGAACTAAACTTGCCTGTAGATAAGATGGACTATTTTGTACCCGTATTGTATGATTGTATTGCAGAAACTGCAAAACTGATGTTTATTTATAAATTGATGCAACCTGAGAAATTGAAGAACGTGGAGCTTGGGCTAGAGTTTGCTGATCTTCATCTACACAAGCGGGCGATTTCGGGCAACAACCGGAGTGTTGCGGCGGAGCTAGGACCGGGCGACGGCGGAGCTGCAGGTACACGACGGCGCATGGATAACTCTTCGCTGCAACTCATCCGCGACGTCGGAACTAAATTGAGCAAACATTCTCGCCCAACCAAGGATTTCATCATCAAATCCCTCCGACAAGTTGTAGATGCTTTTGCATGTTTGGAACAGTCGTACGTCTCAGATGGTAGATTGAAGTCAGAACCAGCTAAGAAATTGGAGGGTTGTACAAAGCCTCTAAGGAATTCTATAATTAATGGCCTTCTACGGAATAGAGATAAAGATGTGAGACTTCTATTAGCTATATGTGTTAGTGAAATTTTCCGGGTCATGGCACCAGAACCACCTTTCGAAGACAAATATCTAAGGGATGTTTTTATGCTTCTTTTGAGTTCTTTTTCTGAGCTAGCGGATACGACAAGTCCACTTTTCTCTTGGAGGGTTAAAATACTAGAGACAGTGGCACGATGTAAATGTTGTGTGATAATGCTTGACATTGGATGCAACGACTTGGTGTTGGAGATGTTTAATACATTTTTCTCTGCTTTGAGAGACTATCACGAGCCCAGTTTGGTTAACAACATTTTGTCCATAATGACCCATATTCTAAGTGAGGATGCCTCTCCACCACTTGTAGATGTTGTTTTGCATAATCTTGTAAAGGAGGAAAAGGGTGAACCCACAGCTGCTTCTCGCCTTGCGGGTTCCATAATTGGAACTTGTGCTGAGACGCTTGAACCACTAATTTGTGGATTCTTAACATCTTGTATTTCAGAGAGAGATGTCGTGGGGAGTGAACTCAAAGAATTTTACCATGAAATAATTTTTAGAATTTTCCAATGTGTCCCTCAAATGCTTCTTCCTGTGATTCCAAACTTGACTCTAGAACTTTTGACGGATCAGGTCGATGTTAGAATAAAAGCAGTTAAAATCATTGGCAGACTTTTATCTCTACCTGGACACTGTGTAGCACAGAAGTACCGAGGACTTTTTGTGGAGTTCTTGAAAAGGTTTTGTGACAAGTCTGCAGAAGTTAGAATTCATGCAATCCAATGTGCTAAAGATTGTTATATGGCCAATCCTGATTGTTCAGAATCTATGGAAGTTCTTGCTGCAGTAGAAGAACGATTGTTAGACTTGGATGATAGAGTAAGAACACAAGCGGTAATTGTTGTTTGTGATATTGTCCGATCAAATATCAAATTTGTTCCACCAACACTAATATCTCAAGCTGCTGAAAGACTACGAGATAAGAGGATATCAGTTAGGAAAAAAGCTCTTCAGAAATTGTTGGAAGCATATCGAGATTATTGTGATAAATGTTCTAAAGGCCAATCAACTATGAACGATGCCTTTGAACAGATCCCATGTAAAGTCTTGATGCTTTGCTATGATAAAGATTGTAAGGAGTTCAGGTCCCAGTGTATGGAACTTGTTCTTGTGGAAGATTTATTCCCAGCTGAACTCTCCATTGAGGAAAGAACTAGACACTGGATTCGTTTATTCTCTCTTTTCAATAACTATCATGAAAAGGCCCTCGGATATGTTTTGCTGCAAAAACAGAGGTTACAAAATGAGCTGCGGACTTATTTGGGTCTACGAAAAAGGGACAAGGAGAACCGATCAGAAGAAATGGAAAAGCAAATTGAAACTGCATTTGTCAGAATGGCAGCTTGCTTTCCAGAGCCTACAAAAGCAAAGGAGTCCTTTTATAAATTAAATCAAATTAAAGATAATCCTATTTTTAATTTTTTGGAGCTTTTACTTGACCAGTTGACAATTGTTGAAGCTCAGGCCACCAGAGACAAATTGTTGAGGATGATAGGAAGTAAACAGCCTCATTTTGAGTTTTTGAAATCACTCTCCTCAAAGTGCTCGTATAATTTATTCAGCACAGAACATATACACTTTGCATTAGACTGCATTTTGAGTGACAGACTTGGAAACAGACATTTGGAGGGTCCTACTGGCAAGCTTCTACTGGCTATTATCAGCATTTTCCCCTCACTCATCAGAGCCTTGGAAGGTCGACTGCTGAGGTTGTTGGAAGAAAGCAATTCAATTGATAGTAAGCTGATCGACGTATTGTCAAAAGCAGGCCCTCATTTATCAATTGAACTCAGGGATGTATACCCATTTCTGGAGAGGCTATGCTTGGAGGGTACTCGTGCTGAATCAAAGAGCGCTGTTTCTGCCATTGCAGCTTTAGCAAGTACTTCTGATTATTTTTGGTTCTCTAAACTATGTAAGGGACTTGTTGCTTCTCTACACAGGGGAATGAATCTCCCAACAGTACTTCAATCTTTAGGTTGTATTGCAAAATATTCTGTTTCAACATTTGATGATCACGATCAGGATGACGGGATCATATCTCATATATATGAGAAAATCTTCCATGTGGACTTATCAGGTAATTTAAGTGAATTAGATGGTGATGCTGCTGGCAGCGATTCTAGGGATTTAAAGATTTATGGGTTGAAAACCCTCGTTAAGAGTTTTTTGCCGCATCAAGGGACTCCTAGAAGAAATGTTGACAAGTTTCTGAACGTTTTATCTCGGATGCTGAATATGTGTGAATCTTCTGTTGAGATCATCCCTACTGAGGGTGATCAGGCTCGAATCAAATTAGCTGCTGCAAAATCAGTTCTTCGTCTTGCCAGAAGATGGGATTTACAAATTGCACCAGAGATTTTCCGTTTGACTATCTTGATGGCAAAGGACCCGTCTTATAAGTCTAGAAAGCAATTTATTGACAAAGCACACAAGTTACTAAAGGAGCAGGCTATACCTACTCGTTATGCTTGTGCTTTTGCACTTTGCTTCTCGGATAGCATGAAAGATCTTCGGGATGATTCACTTAAATATATGGCAGAATTTATTGAGCAATACAGTAAGATTGCACAGATTCATCAAACTTCTGTGGCTCAAGATGGGTCAATGACTTTTGCCCCAGCGTATATAGTAGTATTCTTGGTATATATTCTAGCTCATGATTCAGGCTTCCCACATGTGGACTGTCAAGATGAAAATGTATATGCTCAATTTTGCAGGCCATTCCTATTTGTGTTGCAGATGTTATTTAATGCAGATGTAAATGCTGCCAAAGATACTGTTTTGTATTTGCACAGTATTTTTCGTGCCATTAGGAGGGTTGAGGATGCTGTGGATATCGAAATATCACCTAAGTTGCACATCTTGGCGGACATCGGACTCTCTTTTGTAACTTCTCTAAATTCTTCTGGAGTTTCCCTGACATGTGCTCCAAAGCAGATTTTGCTGCCATTATCTCTATATAGAGTAACCTCCAGGCAGCAATCTCGATATGCTTATGATGAATGTCTCGTTGGAAGAGTTATTAAAGCATTTCAATCACAAACCTTTTTGCCCGCTAATACTTCTACAAGAGGTGATCAAAAGTGCTTGGAGGGTATCATGCAAACAAACATCAACCCGTGTTCCTCAATGAGCATGAGAGCTTGTGAGCAAGTTGAAACCATTTCCTCCAGAGCAACGAAGATAAAAAAAACTGTGAATCAGGAGACTATTGTTGGACAGAAGCGAAAACGGGCAGTCTCTCCAACAACATCCACATCAATTGAGTTGCGTGAATGTTCTCAAGTTATTCGACAAAATTTTCCAACAAAAAGAGAAAAAAGTAAATTTTCTTCTCGATGTGAAACTACAGAGGATCCTCTGCTTGAAGCAGATGTGTCAATCCAGCGTGTAGATATGAATGTAACTTCTCAGGACAATGTGTTGGCAAAGAACAGTTTGGAGGATGCGTCCTCAATGTTTATCAACGACCAGCTTAATGATCCTTGCAGTATGAAGGTCAGAAATATTAGTGGGCATGTTGAACTGCTGAGCTCGGATACTGAGAGTTAG 6027 41.08 MVLRLVPASWAWAHLGRTLIAATDRRRKFRISFRVRSPTGGTSACFFLSESISSAASDLVALCAFRFVDQHRKYLIQMKTADASLFSMFFKHKDKGSTSNDESEDLGDVLDSEVNSYLNNRKETHYKKIIWEQINKDYLQDQAAKKLGRDIVGAAAVVKKSKKRQRKKEAPINNPAQADTEASLEMLTKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGVSSCKENSSLKQSHQSHCSYQLEDDLEDNHADTMFEENIDIEGEDPTETYGNEYYDFENEEEYGYGYDLGNCKVNASLFLSSLGRRALGKSSLKKKENHKLIILQGKYPLHTHGFRLCVEGPCRTRISFAVKDCSVLHYKKAVAWCCISDLYGVNVRPVAPFGSSSRQPFVDPALIHRSLPDELLFEVFARMAPYDLGRASCVCRKWRYTIRNPVFWRSACLKAWQLSGVVENYKFLQSMYDGSWRKMWLLRPRIRTDGLYVSRNTYIRAGIAEWKITNPVHLVCYFRYIRFFPSGRFLYKNSSQKIKDVAKCMNFRASKADCIFGGHYTLSDDKVEAAVLYPGARPTVLRIRMRLRGTSTGANNRMDLLTLVTSGMNNNEVGDPEEDILGIVERWRDDETHNPDVPAVSHKRGLTPFIFVPFDQVETSELNLPVDKMDYFVPVLYDCIAETAKLMFIYKLMQPEKLKNVELGLEFADLHLHKRAISGNNRSVAAELGPGDGGAAGTRRRMDNSSLQLIRDVGTKLSKHSRPTKDFIIKSLRQVVDAFACLEQSYVSDGRLKSEPAKKLEGCTKPLRNSIINGLLRNRDKDVRLLLAICVSEIFRVMAPEPPFEDKYLRDVFMLLLSSFSELADTTSPLFSWRVKILETVARCKCCVIMLDIGCNDLVLEMFNTFFSALRDYHEPSLVNNILSIMTHILSEDASPPLVDVVLHNLVKEEKGEPTAASRLAGSIIGTCAETLEPLICGFLTSCISERDVVGSELKEFYHEIIFRIFQCVPQMLLPVIPNLTLELLTDQVDVRIKAVKIIGRLLSLPGHCVAQKYRGLFVEFLKRFCDKSAEVRIHAIQCAKDCYMANPDCSESMEVLAAVEERLLDLDDRVRTQAVIVVCDIVRSNIKFVPPTLISQAAERLRDKRISVRKKALQKLLEAYRDYCDKCSKGQSTMNDAFEQIPCKVLMLCYDKDCKEFRSQCMELVLVEDLFPAELSIEERTRHWIRLFSLFNNYHEKALGYVLLQKQRLQNELRTYLGLRKRDKENRSEEMEKQIETAFVRMAACFPEPTKAKESFYKLNQIKDNPIFNFLELLLDQLTIVEAQATRDKLLRMIGSKQPHFEFLKSLSSKCSYNLFSTEHIHFALDCILSDRLGNRHLEGPTGKLLLAIISIFPSLIRALEGRLLRLLEESNSIDSKLIDVLSKAGPHLSIELRDVYPFLERLCLEGTRAESKSAVSAIAALASTSDYFWFSKLCKGLVASLHRGMNLPTVLQSLGCIAKYSVSTFDDHDQDDGIISHIYEKIFHVDLSGNLSELDGDAAGSDSRDLKIYGLKTLVKSFLPHQGTPRRNVDKFLNVLSRMLNMCESSVEIIPTEGDQARIKLAAAKSVLRLARRWDLQIAPEIFRLTILMAKDPSYKSRKQFIDKAHKLLKEQAIPTRYACAFALCFSDSMKDLRDDSLKYMAEFIEQYSKIAQIHQTSVAQDGSMTFAPAYIVVFLVYILAHDSGFPHVDCQDENVYAQFCRPFLFVLQMLFNADVNAAKDTVLYLHSIFRAIRRVEDAVDIEISPKLHILADIGLSFVTSLNSSGVSLTCAPKQILLPLSLYRVTSRQQSRYAYDECLVGRVIKAFQSQTFLPANTSTRGDQKCLEGIMQTNINPCSSMSMRACEQVETISSRATKIKKTVNQETIVGQKRKRAVSPTTSTSIELRECSQVIRQNFPTKREKSKFSSRCETTEDPLLEADVSIQRVDMNVTSQDNVLAKNSLEDASSMFINDQLNDPCSMKVRNISGHVELLSSDTES 2008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31653904 31685027 - CrPI670011_11g019910.1 Cre11g1991 513736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1991 2008 CDD F-box_AtGID2-like 396 439 - -
Cre11g1991 2008 SUPERFAMILY F-box domain 396 474 IPR036047 GO:0005515(InterPro)
Cre11g1991 2008 Gene3D - 783 1169 IPR011989 -
Cre11g1991 2008 Coils Coil 1249 1269 - -
Cre11g1991 2008 SUPERFAMILY ARM repeat 790 1656 IPR016024 -
Cre11g1991 2008 FunFam F-box protein 7 384 476 - -
Cre11g1991 2008 ProSiteProfiles F-box domain profile. 392 438 IPR001810 GO:0005515(InterPro)
Cre11g1991 2008 CDD PDS5 755 1382 - -
Cre11g1991 2008 Gene3D Single helix bin 86 149 - -
Cre11g1991 2008 Pfam Sister chromatid cohesion protein PDS5 protein 754 1813 - -
Cre11g1991 2008 Pfam F-box only protein C-terminal region 452 661 IPR045464 -
Cre11g1991 2008 Pfam F-box-like 397 440 IPR001810 GO:0005515(InterPro)
Cre11g1991 2008 Pfam Brf1-like TBP-binding domain 108 206 IPR011665 -
Cre11g1991 2008 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 732 1941 IPR039776 GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006281(PANTHER)|GO:0007064(PANTHER)|GO:0007064(InterPro)
Cre11g1991 2008 Gene3D - 388 476 - -
Cre11g1991 2008 SMART fbox_2 398 438 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1991 K11267 - - csv:101216961 2009.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1017 Cre-Chr1:16350524 Cre11g1991 Cre-Chr11:31653904 1.60E-169 dispersed
Cre03g1931 Cre-Chr3:36333911 Cre11g1991 Cre-Chr11:31653904 2.20E-16 dispersed
Cre09g0309 Cre-Chr9:3004360 Cre11g1991 Cre-Chr11:31653904 2.80E-25 dispersed
Cre11g1991 Cre-Chr11:31653904 Cre08g1311 Cre-Chr8:26200386 4.20E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g255 . . . . . . . . . . . Cma09g00791 . . . Cpe06g00624 . . . . . . . . . . . . . . . Cone4ag1413 Cone7ag1525 . . Lsi04g02394 Csa04g01794 . . . . . Bda01g01441 Bpe02g01645 . . . . . Cmo09g00783 . . . Car09g00704 . . Bhi09g02687 . . . . . . Cla11g01539 Cam11g1600 Cec11g1629 Cco11g1630 Clacu11g1757 Cmu11g1573 Cre11g1991 . . Chy07g00633 Cme07g00847
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006492 1 5 1 1 0 0 1 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36