Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2004 ATGCCACCTTCCCCTTCCTTCCCATCTGGGTCTCGTGGAAAATGGAGGAAAAAGAAGAGGGATTCGCAAATTGGCCGCAGAAACAACTACGCCAACAATAATAACAACGGAATCAACAGGCATGAAGATGAGGATGAAGATGAAGACCTTGCTGCTGCTGAAAATGAGGAAATGGAACGTGATAACAACGATGATTCTGAGGACCCTCAGATTACCCTTCACTCCACGCCCAATTCCACTATTCAGGAGACTGAACTTCTGTCGGATGATAAAGTTCGAGTCTCCGAGTTTCCTCAGGTCATTAAGCGGGTTGTCACTCGCCCTCACTCTTCTGTGTTGGCTGTTGTGGCAATGGAGAGGACAAATCAGTACGGAGAGAGTAAGGGGATGTCTGGAAATTCCTTGATTTTGGAGAATGTGTCTTATGGGCAACTCCAGGCACTGTCTGCTATGCCCGCGGATAGTCCGGCTTTGCTGGATCAGGAGAGGGCGGAGGCTGGGAACGCCGCGTATGTAATAACTCCACCACCGATTATGGAAGGGCGTGGCGTGGTTAAGAGGTTTGGGAGTAGGGTACATGTCGTCCCCATGCACTCAGATTGGTTTTCACCTGCCACGGTGCATCGACTTGAGAGACAAGTTGTTCCACATTTTTTCTCTGGGAAATTGCCCGACCGCACTCCTGAAAAGTATATGGAGATTCGAAATTTTGTTGTTGCCAAATACATGGAGAATCCCGAGAAAAGGGTCACAGTTTCAGACTGCCAAGGATTGGTTGATGGTGTTAGTAATGAAGATTTAACTCGAATTGTTCGATTTCTTGATCATTGGGGTATTATTAATTATTGTGCTCCTACACCTAGCTGTGAACCATGGAATAGCAGTTCATACTTGAGAGAAGATATGAATGGTGAGATTCACGTGCCATCAGCTGCTTTGAAGCCTATTGATAGCTTGGTCAAATTTGACAAACCAAAATGTAGGCTCAAGACAGCTGATGTCTATTCAGCACTTCCATGCCACGATGACATTGATGGTTTGTGTGATTTGGATAACAGAATTCGAGAGCGTCTAGCTGAAAATCATTGTAGCTCTTGTTCTCGGTCTGTTCCGATTGCATACTACCAATCACAGAAGGAGGTTGATGTTTTACTTTGCTCTGACTGCTTCCATGAAGGCAAATATGTTGCTGGCCATTCAAGCATTGATTTTCTGAGGGTGGACATGGCGAAAGATTATGGTGAACTAGATAGTGAAAATTGGACTGATCAAGAAACTCTATTGCTTTTAGAGGCAATAGAATTGTATAATGAGAATTGGAATGAAATTACCGAACATGTTGGGTCCAAGTCTAAAGCTCAATGCATTATACATTTTCTTCGTCTATCAGTGGAGGATGGCCTTCTAGAAAACGTTGATGTGCCTGGGGTTTCTCTCTCATCAAATTCTTCACATGGAGAAGATAATGAGAAGTCACGTTCAAAGATGAATGGAAACATAGCAGGATCTTCCTCTCAAGAGAATAAAGAGATGCATGATAGGCTTCCCTTTGCCAATTCTGGGAACCCAGTCATGGCGTTGGTTGCTTTTCTCGCATCGGCTATTGGACCAAGAGTTGCTGCATCTTGTGCTCATGCATCCTTAGCTGCATTATCTGAGGACAGTGTAGCTTCTTCTGGGAGCATCTTTCAGATGGAGGGTTCTGTAAACGCTAATAATAGGACGAATGTGGACATCAAACAAGTCAGAGACGGAGGCTCCTTTGGAGAACATCCAAACTCAATCGATCAAAAAGATGAGAACAAGGCAGAGACAGAAGCTACACTATTATCTTCTGAAAGAGTTAAAGTTGCAGCAAAAGCAGGCCTTGCTGCCGCTGCAACAAAGGCGAAGTTGTTTGCTGACCATGAAGAACGAGAAATCCAACGATTGTCTGCTAATATTATAAATCATCAGTTAAAAAGACTGGAGCTGAAGCTGAAGCAGTTTGCGGAAGTAGAAACCTTCTTGATGAAGGAATGCGAACAAGTTGAGAGGACAAGGCAGAGGTTTGTCGCAGAGCGAGCAAGAATGTTAGGTGTTCAATTTGGGCCTGCTGGAGTTACGCCACCTGCGAGTTTACCAGGCGTTATCCCTTCCATGGTAAACAACAGCAATACAAACAATAGGCAGAATATGATCTCACCTCCAGCTTCACAGCCGAGCGTTTCGGGGTATAGCAACAACCAACCACTTCACCCCCACATGTCATACATGCCCCGACAGTCAATGTTTGGTTTGGGACAAAGGGTACCCTTATCGGCAATTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCCTCCACCTCTTCTTCTAACCCCATGTTCAACGGTCCAAGCAATGCACAGCCTTCTCTCAGTCACCCAATGATGAGGCCAGTTACTGGATCCAGCTCTGGATTAGGGTGA 2460 45.53 MPPSPSFPSGSRGKWRKKKRDSQIGRRNNYANNNNNGINRHEDEDEDEDLAAAENEEMERDNNDDSEDPQITLHSTPNSTIQETELLSDDKVRVSEFPQVIKRVVTRPHSSVLAVVAMERTNQYGESKGMSGNSLILENVSYGQLQALSAMPADSPALLDQERAEAGNAAYVITPPPIMEGRGVVKRFGSRVHVVPMHSDWFSPATVHRLERQVVPHFFSGKLPDRTPEKYMEIRNFVVAKYMENPEKRVTVSDCQGLVDGVSNEDLTRIVRFLDHWGIINYCAPTPSCEPWNSSSYLREDMNGEIHVPSAALKPIDSLVKFDKPKCRLKTADVYSALPCHDDIDGLCDLDNRIRERLAENHCSSCSRSVPIAYYQSQKEVDVLLCSDCFHEGKYVAGHSSIDFLRVDMAKDYGELDSENWTDQETLLLLEAIELYNENWNEITEHVGSKSKAQCIIHFLRLSVEDGLLENVDVPGVSLSSNSSHGEDNEKSRSKMNGNIAGSSSQENKEMHDRLPFANSGNPVMALVAFLASAIGPRVAASCAHASLAALSEDSVASSGSIFQMEGSVNANNRTNVDIKQVRDGGSFGEHPNSIDQKDENKAETEATLLSSERVKVAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVERTRQRFVAERARMLGVQFGPAGVTPPASLPGVIPSMVNNSNTNNRQNMISPPASQPSVSGYSNNQPLHPHMSYMPRQSMFGLGQRVPLSAIQQQQQQQQQQQQQPPSTSSSNPMFNGPSNAQPSLSHPMMRPVTGSSSGLG 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31801349 31807642 + CrPI670011_11g020040.1 Cre11g2004 513749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2004 819 FunFam SWI/SNF complex subunit SMARCC2 isoform c 199 287 - -
Cre11g2004 819 Pfam SWIRM domain 203 282 IPR007526 GO:0005515(InterPro)
Cre11g2004 819 CDD SANT 420 462 IPR001005 -
Cre11g2004 819 Pfam Myb-like DNA-binding domain 419 461 IPR001005 -
Cre11g2004 819 ProSiteProfiles Myb-like domain profile. 413 463 IPR001005 -
Cre11g2004 819 FunFam SWI/SNF complex subunit SMARCC2 isoform C 417 467 - -
Cre11g2004 819 MobiDBLite consensus disorder prediction 715 749 - -
Cre11g2004 819 Pfam SWIRM-associated region 1 621 691 IPR032451 -
Cre11g2004 819 MobiDBLite consensus disorder prediction 42 64 - -
Cre11g2004 819 MobiDBLite consensus disorder prediction 1 81 - -
Cre11g2004 819 SUPERFAMILY Homeodomain-like 192 290 IPR009057 -
Cre11g2004 819 SMART sant 417 465 IPR001005 -
Cre11g2004 819 MobiDBLite consensus disorder prediction 767 819 - -
Cre11g2004 819 Gene3D - 417 467 - -
Cre11g2004 819 Coils Coil 634 654 - -
Cre11g2004 819 SUPERFAMILY Homeodomain-like 418 467 IPR009057 -
Cre11g2004 819 ProSiteProfiles SANT domain profile. 416 467 IPR017884 -
Cre11g2004 819 PANTHER SWI/SNF COMPLEX-RELATED 212 728 - -
Cre11g2004 819 Gene3D - 199 286 IPR036388 -
Cre11g2004 819 ProSiteProfiles SWIRM domain profile. 193 291 IPR007526 GO:0005515(InterPro)
Cre11g2004 819 MobiDBLite consensus disorder prediction 715 753 - -
Cre11g2004 819 MobiDBLite consensus disorder prediction 582 604 - -
Cre11g2004 819 MobiDBLite consensus disorder prediction 479 511 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2004 K11649 - - csv:101220514 1438.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0875 Cre-Chr2:5703374 Cre11g2004 Cre-Chr11:31801349 1.20E-50 dispersed
Cre09g1048 Cre-Chr9:10802530 Cre11g2004 Cre-Chr11:31801349 1.50E-07 dispersed
Cre11g2004 Cre-Chr11:31801349 Cre11g2300 Cre-Chr11:34612455 2.20E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37