Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2009 ATGAATGAATGTGTTGCATTATCTCAACCATCGTTCATTTCTCCGATTGACAGTCGACCGAAGCAAGTGAAAGATGTGGCGTATCAGGATGAAGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAGTTGTCCCCATATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTCGCAATTTCTCACCAACTATTCGGTCCCGAACTTTACAAGTCCAGAGTTTTAGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATAAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACGGAAGATGCTCAGAATGCTCTGAGGCGTACCATGGAAACACACTCTAAAGTGACACGCTTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAAGTTATGAGCAAGCGTATATTGCATATTAGTAATGAAGAAGGTCTTAGTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCAGCACGCTTATTTGGATCATCGATCTCTTCCAAGGATTTGATTAGTGTGTCTGGGATTATCCCTCGGGAGGTTGTTGATGCACTTTTCACTGCTTGTAAAAGTGGTAGCTTTGATATTGCAAACAAGGAAGTCAACAATGTGCTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAAGATATGCAAGAAGTTGGCCGAAGCAGACAAGTGTCTCGTCGATGGCGCGGATGAATATTTGCAACTGCTCGATGTGGTTAGTCAAATGATGCAAGCTTTAAGCAGTATGCAATCGTAA 1020 43.82 MNECVALSQPSFISPIDSRPKQVKDVAYQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDALFTACKSGSFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQMMQALSSMQS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31874480 31881171 + CrPI670011_11g020090.1 Cre11g2009 513754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2009 339 SMART AAA_5 44 177 IPR003593 GO:0016887(InterPro)
Cre11g2009 339 Pfam ATPase family associated with various cellular activities (AAA) 48 176 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre11g2009 339 Pfam RCF1/5-like, AAA+ ATPase lid domain 188 225 - -
Cre11g2009 339 FunFam Replication factor C subunit 4 243 332 - -
Cre11g2009 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 224 IPR027417 -
Cre11g2009 339 Pfam Replication factor C C-terminal domain 244 328 IPR013748 -
Cre11g2009 339 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 19 335 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cre11g2009 339 FunFam Replication factor C subunit 5 12 177 - -
Cre11g2009 339 CDD AAA 29 169 - -
Cre11g2009 339 Gene3D - 16 176 IPR027417 -
Cre11g2009 339 FunFam Replication factor C subunit 4 179 242 - -
Cre11g2009 339 Gene3D - 179 242 - -
Cre11g2009 339 CDD HLD_clamp_RFC 177 236 IPR047854 -
Cre11g2009 339 Gene3D - 243 333 - -
Cre11g2009 339 SUPERFAMILY post-AAA+ oligomerization domain-like 243 332 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0592 Cre-Chr10:5420495 Cre11g2009 Cre-Chr11:31874480 1.30E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2009 K10755 - csv:101221224 584.334