Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2011 ATGCTGAAGCCGAAACCCTTCACCGGAGCTAATGTGTTCGTCTCCCGCAATCTTGTCGCTCCGGAGATGTTCGACGCTCTTCACGACGCTCTGAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCGAAACGGTCCTAACGATTATCATGTTATCTCCTCGGCCGATCACGAAAAGTTCGAGGATCTTCGCGCGAAGGGATGCAAGTTGCTAGGTCCTCAGTGTGTGATGTCATGTGCAAAAGAGCACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCAATGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCATACGAAAGCCTCTCTAGATGTCAGCTTTGTTATTGCGAAGAATGCTTTGGCTGCGAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGACATTTGCTTGGTTACAACAATGCTGGATTGAACATCGTGTAGTGCCTCAGGAGGGATATCGAGTCCCTCCATTTTCTGGATTGAATATTTCAGTATCTAGAATTCCTGCAGGTGAGCGCAAGGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATACTCTGCCGATCTTACGAGAAAGTGTGACAAGTACAAGGTTGCACGGACATGGGGCCGTATCAATATTGTTACTCGGAAATGGTTTGATCAGTCCATAGCTAGAAAAGCATGTCTTAATGAGGAGTCATACCCTGTTGGTAGCATTTCCGGAACTTCAAATAAAATGACGAGGGGCTGCTTGACTGCTCACAATAGCCAAGAAAAGGTTACTGGGAACTTGCAAACTGTACCGTCCTCATTTATTGCTGATTCAAATTTCGCAGCAGTTTCTGGTCCTGGGTTTTCAGATATGGATTTTGAAGCTACTCTTTCACAGAGCACATCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTTCCAGTTGGCATGGGAAAGAACGAAGAAAACACCAATAATTGTATTGCAAATGACTTTCAGTCTGAAGACAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGAAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCAGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAAATCCATCGGAAATGGAGAAAAAGGAGGTTAGAGATATTGCAGCTTCAGGAGTCATTCATGTGGTTAGAACCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTAGTAGACACATGGCATATGATGAACTGATTCCTAAAGCATCCAGTAAAACGAGCACCATCGTCATGGATCGGAATAAAGTTCCAAATGTTCATCCAATCATGCCATCAAATGTGTTAGAAGGAAATATTCATGTTAGAATTGGAAAGACATCAATGACAGAGGAAACAATTCATGAAAAAAGTGAAACAAACGTGAGTGGAGACAGGACCATGAAATTATCCCAGAAAAGCCAACAATGTGTAGCAAATGGTACAAACAAGAGTCAAGAAAAGATGCGGCGTGATTTCGTGGTTCCAAATGGGAAGTCATCATGTGTGTTTAGGGGAAAAATATTTTGTTTTTCTAGTTCCTTCCCAGAAGATCGGAGAGGTGAAATTGTTGAATGGATAAATCAAGGGGGAGGTGAGGTTGTTGAAGATCGTATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGAGATACCAAGGGGTACAGATGTGCATACTACTTACGTATCAAGTCATTGGGTCAGATCATGTTTAGAGGATGGATGCTTGTGGGATACCAATGGACACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGTCTGGATTTGAAAAGATACGGTTCTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGTAAGTTTTCCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATATATGAATGTGTCAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCCGCGGGCATATGCACTGTCAGTCAGTTTCCTACTCAAGCCGTCCAAATGATAGCCAGTGAAAGTGAATCCCAGTTCCCCATCCATTCTGCTATCCCGAGAGACCAATCAGCTGGAACTAATAGTAGCACTATAGGAGAAGGTGAACAAATAAGTTTTACTAAAAAAAAGCGCAAGTTCCTTGACGAAGCTGTACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCAGTCATTTTGACTGCAATTTGAACTCCACAAAAGAAACTACATCAAAATCCTCTGTACTAACTTCACATGTCCCTGATGTCGCTGCCGCAATTGAGGACTTGTTGGAGCAGACAACTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTACTTTTCCACCTGACTGTTCGGTCGTTGGTCAAGAACATTCAGAAGCTCCTCCAATTGGTGGTTTATCTAACCAGTGGTCAAAAAGAGCTGACAGAAAAGAAGACATTAGCAATCCTACTACTGAAGATGGGGGTGTAGGCATATATGATGGCTTTAGTGAAACACAAACTGACTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCAGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCATGACTTGA 2883 42.14 MLKPKPFTGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKGCKLLGPQCVMSCAKEHRPLPQQGFTCCLAMDGVKILASGFQEDEKVEIGKLVNAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVTFAWLQQCWIEHRVVPQEGYRVPPFSGLNISVSRIPAGERKEIEKLILQNGGRYSADLTRKCDKYKVARTWGRINIVTRKWFDQSIARKACLNEESYPVGSISGTSNKMTRGCLTAHNSQEKVTGNLQTVPSSFIADSNFAAVSGPGFSDMDFEATLSQSTSMFSDASHFINEVDVEVPVGMGKNEENTNNCIANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTNWLEDCDRQKKEIPILSRHMAYDELIPKASSKTSTIVMDRNKVPNVHPIMPSNVLEGNIHVRIGKTSMTEETIHEKSETNVSGDRTMKLSQKSQQCVANGTNKSQEKMRRDFVVPNGKSSCVFRGKIFCFSSSFPEDRRGEIVEWINQGGGEVVEDRMKQKVHFTVECHGEIPRGTDVHTTYVSSHWVRSCLEDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGICTVSQFPTQAVQMIASESESQFPIHSAIPRDQSAGTNSSTIGEGEQISFTKKKRKFLDEAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHVPDVAAAIEDLLEQTTKIHDQKSPGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRADRKEDISNPTTEDGGVGIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSMT 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31892705 31909459 - CrPI670011_11g020110.1 Cre11g2011 513756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2011 960 FunFam Transcription coactivator 345 455 - -
Cre11g2011 960 SUPERFAMILY BRCT domain 557 642 IPR036420 -
Cre11g2011 960 ProSiteProfiles BRCT domain profile. 653 736 IPR001357 -
Cre11g2011 960 Pfam BRCA1 C Terminus (BRCT) domain 368 441 IPR001357 -
Cre11g2011 960 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 777 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Cre11g2011 960 ProSiteProfiles BRCT domain profile. 363 455 IPR001357 -
Cre11g2011 960 MobiDBLite consensus disorder prediction 512 539 - -
Cre11g2011 960 FunFam Transcription coactivator 36 94 - -
Cre11g2011 960 MobiDBLite consensus disorder prediction 887 929 - -
Cre11g2011 960 ProSiteProfiles BRCT domain profile. 182 261 IPR001357 -
Cre11g2011 960 ProSiteProfiles BRCT domain profile. 553 640 IPR001357 -
Cre11g2011 960 Pfam twin BRCT domain 191 243 IPR001357 -
Cre11g2011 960 Pfam twin BRCT domain 657 718 IPR001357 -
Cre11g2011 960 Pfam twin BRCT domain 103 166 IPR001357 -
Cre11g2011 960 FunFam Transcription coactivator 551 646 - -
Cre11g2011 960 CDD BRCT 103 170 - -
Cre11g2011 960 Gene3D BRCT domain 97 185 IPR036420 -
Cre11g2011 960 Gene3D BRCT domain 549 646 IPR036420 -
Cre11g2011 960 SUPERFAMILY BRCT domain 57 185 IPR036420 -
Cre11g2011 960 SMART BRCT_7 97 174 IPR001357 -
Cre11g2011 960 SMART BRCT_7 555 630 IPR001357 -
Cre11g2011 960 SMART BRCT_7 4 86 IPR001357 -
Cre11g2011 960 SMART BRCT_7 184 251 IPR001357 -
Cre11g2011 960 SMART BRCT_7 650 726 IPR001357 -
Cre11g2011 960 SMART BRCT_7 365 445 IPR001357 -
Cre11g2011 960 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Cre11g2011 960 SUPERFAMILY BRCT domain 365 449 IPR036420 -
Cre11g2011 960 Gene3D BRCT domain 650 743 IPR036420 -
Cre11g2011 960 SUPERFAMILY BRCT domain 617 737 IPR036420 -
Cre11g2011 960 MobiDBLite consensus disorder prediction 518 538 - -
Cre11g2011 960 CDD BRCT_TopBP1_rpt3 362 446 - -
Cre11g2011 960 SUPERFAMILY BRCT domain 185 262 IPR036420 -
Cre11g2011 960 CDD BRCT_TopBP1_rpt2_like 185 251 - -
Cre11g2011 960 Gene3D BRCT domain 344 452 IPR036420 -
Cre11g2011 960 Gene3D BRCT domain 24 94 IPR036420 -
Cre11g2011 960 FunFam Transcription coactivator 97 185 - -
Cre11g2011 960 Gene3D BRCT domain 186 261 IPR036420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2011 K10728 - - csv:101212525 1701.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44