Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2012 ATGAACTCCACCGTCTTCCTCCTCTCCACGCCCTTGCCGCCGGCCACAATCCACCGGCTCCGAGCCCCCTCCATATCCGCCTCAAGCTCTCTACCCCACCTCCCGAGCTTGCCCTACCGGAAATCCACTCCCTCTGCTCCCACTCTCTTCATCCCTAGAAAAAACCCTTTCCGAGTCTTCTCCGACGATGGCGACGGAGATAGCGGTGGCCCTGAAGACTACGACATGGACGACGAGGAAATGGAGGAAGTCGACAACAAGAAGGATTTTGACATCGAGTACGATCCTCTAGCCGCGGCCGCAGCTGCAGCAGCGGGTTCCGACGGCGTTGGCGACGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCGTGTCGACGCAGGGGTGGGATTCGGAGATGATTGTGGATTATAGGATAAACGAGGAGGAATTTCATAAGATTAGTTTGCTGCACTGTGATTTCTTCATCAGGAAGCCGCCGGATTCCGACAACGATGTTTATGATTTCAGAGAGATGTATGTTACTCCTCCAGACACTGATGTCTATGCGATCCCTAAAGTTCTTGCTCCAATGCCTCAGAAGTATATTAGATGTGCTCAAAGTGATTATGGATGCTACAATGTCACAGAACCACCCATTGATGCACCTAGAGATCCATTATACAAGTCCGAGAAGGAGGTTCTTAAGGTTTTCTTGACGAAGCACTTCAGAAACCGAAGGGTGCGCGACCCAGAATTTGTCCTAGACTTTGAGGAAATATATGTAATTGATTCAAAAACCAAGTCAATCACCAGGGCAAAAGTCTTGGTCACGGTTCCAGGTGGAAGAGATAGGGACAGGAGAAGCGACTTACTCGTAGTTCGGGATAATGGGAACTCTTTCAAGATCATCCATTCGAGTGAACGAGATGATCCGACCACGGTGATAGAGAAAGAAGAATGGACCAAAACTAGACAAGATTTGGAGAGACATCTTAGGAAGTTAAGGGACTTTAGCATTTCAAATTGCTTTCCCCGTACCAACAAATACTCTCAACATCATCTCTCAGCGTTTTGGATGAGATATAATATGAAGGAAGCTCGACAAAGAACTTATCTTTTTCAAAAGATGGGTAGGCTGTGGAGAATAGAAAAGTCACGAATTGTGTCCAAAATTCAAAAGGCTTCTAGTGATGAAGAGTTTGTTAAATTGAAGCCAAGCAATATACAATCTATGGGCGATTGGATGGACTTTGTGAAAGAAAAGAAAAGTGTAAAATTCAAGGCAACAAGTGAAAAATTCAAATCCATGAAGAAAAGACAACTTCCTCATACATGTAGTCGTAAGGGTTATGCTCGGTCAGAAGAAGAAATGAAAAAGAGTTGTCCAAGCTCATCTTTGGTGACAAGAGTTGCACTATCGACAAGGGAACACAGGAAAAAGGATGGAATCAAGTATGGAAGCAAGAGATACTGTTGCTGA 1461 45.38 MNSTVFLLSTPLPPATIHRLRAPSISASSSLPHLPSLPYRKSTPSAPTLFIPRKNPFRVFSDDGDGDSGGPEDYDMDDEEMEEVDNKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDSDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRVRDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRSDLLVVRDNGNSFKIIHSSERDDPTTVIEKEEWTKTRQDLERHLRKLRDFSISNCFPRTNKYSQHHLSAFWMRYNMKEARQRTYLFQKMGRLWRIEKSRIVSKIQKASSDEEFVKLKPSNIQSMGDWMDFVKEKKSVKFKATSEKFKSMKKRQLPHTCSRKGYARSEEEMKKSCPSSSLVTRVALSTREHRKKDGIKYGSKRYCC 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31912617 31919142 + CrPI670011_11g020120.1 Cre11g2012 513757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2012 486 PANTHER EXPRESSED PROTEIN 40 337 IPR044710 GO:0000427(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2012 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g2012 Cre-Chr11:31912617 Cre11g2014 Cre-Chr11:31921259 4.60E-32 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g213 . Blo12g01118 . Bda03g00023 . Bpe04g00014 . . . . . Cma09g00769 . . . Cpe06g00606 . . . . . . . . . . . . . . . . . Cone17ag0819 . . . . . . . . . . . . . Sed05g2401 . Cmo09g00761 . . . Car09g00679 . . Bhi09g02714 Tan01g4062 Cmetu07g0118 . Hepe01g1588 Mch11g0855 . Cla11g01557 Cam11g1621 Cec11g1648 Cco11g1649 Clacu11g1778 Cmu11g1594 Cre11g2012 . . . Cme07g00813
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011119 1 1 1 0 1 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26