Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2015 ATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTCACATATTCAAAGAGAAGAAATGGGATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCACGAGTATTGTAGCCCTTCTACACCTTTGATTGACATCTTGGATAAGTATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAACATGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTCATGGCTCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTTATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAACGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGAATGAGAGACTTCAATTCTCAGATGCCCTTTGCCTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA 639 39.12 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31927543 31931762 + CrPI670011_11g020150.1 Cre11g2015 513760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2015 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre11g2015 212 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre11g2015 212 Gene3D - 13 100 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre11g2015 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre11g2015 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre11g2015 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre11g2015 212 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre11g2015 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre11g2015 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre11g2015 212 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre11g2015 212 Pfam K-box region 82 163 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre11g2015 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre11g2015 212 Coils Coil 77 111 - -
Cre11g2015 212 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2586 Cre-Chr5:37031757 Cre11g2015 Cre-Chr11:31927543 2.10E-14 dispersed
Cre10g1125 Cre-Chr10:23271488 Cre11g2015 Cre-Chr11:31927543 4.70E-20 dispersed
Cre05g2030 Cre-Chr5:32287054 Cre11g2015 Cre-Chr11:31927543 9.30E-34 transposed
Cre11g2015 Cre-Chr11:31927543 Cre02g2141 Cre-Chr2:34994301 1.60E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54726 PF01486 K-box 1.20E-18 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2015 K09264 - csv:101222239 408.297