Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g2015 | ATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTCACATATTCAAAGAGAAGAAATGGGATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCACGAGTATTGTAGCCCTTCTACACCTTTGATTGACATCTTGGATAAGTATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAACATGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTCATGGCTCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTTATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAACGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGAATGAGAGACTTCAATTCTCAGATGCCCTTTGCCTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA | 639 | 39.12 | MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31927543 | 31931762 | + | CrPI670011_11g020150.1 | Cre11g2015 | 513760 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g2015 | 212 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 181 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cre11g2015 | 212 | SUPERFAMILY | SRF-like | 2 | 96 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre11g2015 | 212 | Gene3D | - | 13 | 100 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre11g2015 | 212 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre11g2015 | 212 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre11g2015 | 212 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre11g2015 | 212 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre11g2015 | 212 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre11g2015 | 212 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre11g2015 | 212 | ProSiteProfiles | K-box domain profile. | 84 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cre11g2015 | 212 | Pfam | K-box region | 82 | 163 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cre11g2015 | 212 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre11g2015 | 212 | Coils | Coil | 77 | 111 | - | - | |
Cre11g2015 | 212 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g2586 | Cre-Chr5:37031757 | Cre11g2015 | Cre-Chr11:31927543 | 2.10E-14 | dispersed | |
Cre10g1125 | Cre-Chr10:23271488 | Cre11g2015 | Cre-Chr11:31927543 | 4.70E-20 | dispersed | |
Cre05g2030 | Cre-Chr5:32287054 | Cre11g2015 | Cre-Chr11:31927543 | 9.30E-34 | transposed | |
Cre11g2015 | Cre-Chr11:31927543 | Cre02g2141 | Cre-Chr2:34994301 | 1.60E-26 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54726 | PF01486 | K-box | 1.20E-18 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g2015 | K09264 | - | csv:101222239 | 408.297 |