Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2016 ATGGGACGACAATGGTCTGCCGACAAGCTTGTTCTGTTCTTGGATGCAGTACATTGGAATTATGAAGCACCACCACGAACGCTACCGCGCGTTCACCTGTGGTGTAGTGAGGCACCACCTAATTGTACCAGCAACCAATTCTGCCGTCGACGCCGGACAGCGAGTGGGATGGCGGCAGCGGTCGGAGGAGGTAGTGGTAACGTCGGCGGTGGAGATGTGTCGAAGGCGCATGCGGCTATGGCTTTGGTGCAAGTAATCAATGGAGGTTATCATGTTATAACCAAAGTCGCCCTCAATGTTGGAATGAACCAGCTCGTCTTTTGTTTGTTCCGCGACTTGTTGGCTCTCGCGATTCTTTCCCCTGTCGCCTATGTTCGGGAGAAGCGGATTCGTTTGCCCATGACTCGAGACCTCCTCATATCATTCTTCGTTCTTGGTTTAACTGGGATTTTTGGTAACCAGCTTCTCTTTCTCGTTGGACTTGGCTACACTAATCCAACTTATGCTGCTGCCATACAGCCTGCCATTCCAGTTTTTACATTCCTTTTTGCTGTTATGATGGGCACAGAGACTGTGAACTTACTCAAACTGGAAGGACAGGCAAAGGTTGGAGGTACCCTCGTTTGTGTCTCTGGTGCCATATTGATGGTTTTATTCCGTGGTCCAGCTTTGGTTGGAAGCACTGAATCTGATTTCATGTCACATAGCGAAATAAGTGCAAGGGGCCAGCCAGAGCCTGCTGGATGGTTAATGTCTAACTTTCTGGAGTATGGATTGGATCATTTTCATGTTGGGGTTTTATGCTTGATAGGAAACTGTATGTGCATGGCTGCTTTCTTGGCTATCCAGGCACGAGTGTTAAAGAAGTATCCTGCTAACTTATCGGTCACAGCATATTCTTATTTATTTGGTGCTATATTGATGGTGATCACATCCTTCTTTATGACCAACGAATCCACAGACTGGAATTTGACGCAATCAGAGTTTTTTGCTGTCCTTTATGCCGGAGTTTTTGCATCTGCCATCAACTATGGACTCTTGACATGGTGCAATAAAATATTAGGACCTGCATTGGTCGCTCTTTACAATCCACTTCAACCTGCAGCATCTGCGCTGCTATCAAGAGTTTTCATAGGAAGCCCTATTTATCTTGGAAGTGTTTTGGGGGGATCTCTTATAATTGCTGGTCTTTATTTGGTTACATGGGCGTCACATAGGGAACGACAAACGACTCCGGTTTTGCTACCGCATTCAACCAGGTCCTCCGAACCACTTATTCATAAAGATGCATTGACTAACAAGTTTGCATATCAGATAGGACACATTTTCTCAGGGTCTGCCTCATCACCCAAATCTAGTTGGATTACAACTCTGTTCTGTTCCACCCTTGAGCCAGTTGTGCCTCTAGCTTACATAAGTTCTTCAACTCGATGGTTTCTGGGTTTCCGGCCTGAGGTCCACTCTGAATTGGTGCAAATCTGTAATTGCTTGAAATGCTGTGGAATTGAAGCTTGTAGTTGTACAATGAGCCAGAAGGTGAGACTTGCCTTGGAAGAGCAAGGCATTGATTACACATCGTATCATGTCAATCCCATCACGGCCAAGAACATGGACTCCTCATTCTTCAAGATCAACCCAAATGCAAAACTTCCTGTCTTTCAAAATGGTTCCCACGTCATTTTCGACACAATCGAGATAATTCAGTATATAGAGAGAATTGCAGTTGTCTCCTCAGGGATCGATGACGTAATGCCGAGTAGCAGAGAAGTCATTGAATGGATGCATAAGATACAAGAATGGAATCCAAAATTTTTCACTCTTGCCCACATCCCCGAGAAGTACCGCCTTACTGTCACCAGATTTATAAGGCGGGTGGTGATCGCTCGGATGGCCGAAACTCCCGAAATGGCTGCTGCTTACCATCGTAAGCTTAGAGAAGCATACGAAACTGAAGACAAATTGAAAAACAAAACTGTTGTCAAACAAAGCACTGAACATCTAGTTAGACTTCTTGATGAAATCGAATCGAAACTAGGCGAAACTTCTTACTTGGCAGGGGAAGAGTTTACCATGGCTGATGCCGTGTTCATTCCAGTGCTGGCTCGAATCGTGCTGTTGAAGCTGGCAGACGAGTATATAGGCAGCAGACCGAACATTGCAGAGTATTGGGTCTTGGTGCAGCAGAGGCCAAGCTACAAGAAGGTAATTGGGAAGTATTTCAATGGATGGAGAAAGCACAGAACACTTCTGAAAACGTGGTGCTTTGTTCATATCAGAACCTTGCTGAGGAGATATTGA 2298 45.43 MGRQWSADKLVLFLDAVHWNYEAPPRTLPRVHLWCSEAPPNCTSNQFCRRRRTASGMAAAVGGGSGNVGGGDVSKAHAAMALVQVINGGYHVITKVALNVGMNQLVFCLFRDLLALAILSPVAYVREKRIRLPMTRDLLISFFVLGLTGIFGNQLLFLVGLGYTNPTYAAAIQPAIPVFTFLFAVMMGTETVNLLKLEGQAKVGGTLVCVSGAILMVLFRGPALVGSTESDFMSHSEISARGQPEPAGWLMSNFLEYGLDHFHVGVLCLIGNCMCMAAFLAIQARVLKKYPANLSVTAYSYLFGAILMVITSFFMTNESTDWNLTQSEFFAVLYAGVFASAINYGLLTWCNKILGPALVALYNPLQPAASALLSRVFIGSPIYLGSVLGGSLIIAGLYLVTWASHRERQTTPVLLPHSTRSSEPLIHKDALTNKFAYQIGHIFSGSASSPKSSWITTLFCSTLEPVVPLAYISSSTRWFLGFRPEVHSELVQICNCLKCCGIEACSCTMSQKVRLALEEQGIDYTSYHVNPITAKNMDSSFFKINPNAKLPVFQNGSHVIFDTIEIIQYIERIAVVSSGIDDVMPSSREVIEWMHKIQEWNPKFFTLAHIPEKYRLTVTRFIRRVVIARMAETPEMAAAYHRKLREAYETEDKLKNKTVVKQSTEHLVRLLDEIESKLGETSYLAGEEFTMADAVFIPVLARIVLLKLADEYIGSRPNIAEYWVLVQQRPSYKKVIGKYFNGWRKHRTLLKTWCFVHIRTLLRRY 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31933258 31943463 - CrPI670011_11g020160.1 Cre11g2016 513761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2016 765 Gene3D Glutaredoxin 497 573 - -
Cre11g2016 765 Pfam EamA-like transporter family 265 401 IPR000620 GO:0016020(InterPro)
Cre11g2016 765 Pfam EamA-like transporter family 78 199 IPR000620 GO:0016020(InterPro)
Cre11g2016 765 SFLD Main (cytGST) 505 729 - -
Cre11g2016 765 SUPERFAMILY Multidrug resistance efflux transporter EmrE 301 407 - -
Cre11g2016 765 PANTHER GLUTATHIONE S-TRANSFERASE TCHQD 510 765 IPR044617 GO:0004364(InterPro)
Cre11g2016 765 SUPERFAMILY Thioredoxin-like 507 572 IPR036249 -
Cre11g2016 765 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 510 578 IPR004045 -
Cre11g2016 765 CDD GST_N_family 510 571 - -
Cre11g2016 765 Pfam Glutathione S-transferase, C-terminal domain 661 722 - -
Cre11g2016 765 SFLD Glutathione Transferase (cytosolic) 505 729 IPR040079 -
Cre11g2016 765 SUPERFAMILY Multidrug resistance efflux transporter EmrE 111 219 - -
Cre11g2016 765 SUPERFAMILY GST C-terminal domain-like 635 739 IPR036282 -
Cre11g2016 765 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 616 749 IPR010987 -
Cre11g2016 765 Gene3D - 622 736 - -
Cre11g2016 765 Pfam Glutathione S-transferase, N-terminal domain 507 572 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0823 Cre-Chr7:6922379 Cre11g2016 Cre-Chr11:31933258 5.50E-13 dispersed
Cre11g1981 Cre-Chr11:31568705 Cre11g2016 Cre-Chr11:31933258 1.50E-35 dispersed
Cre11g2016 Cre-Chr11:31933258 Cre08g1412 Cre-Chr8:27110485 5.70E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2016 - - - 0.0