Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2036 ATGCTGTTCTGGCTTCTAGTGGCATATCCACAGGGAACAGTGTCATTTTTCTTGCAGCAGCTCGTTGTTACCAGATTACTATATGTTCAAGAAAGCCATTCCTGTATTTGGTATCTCAGATGGTTTGTTGTAATTGTATTATGCTTGACTGGTGTCACCATGGGCTTCTGTACCGTAAAATGGCAATGGCTACTGATTCTTCACATTGTGCCGCTTTGTATGTTAATGAGCAGAAGCAGGGGTATCAGTTCTGATGGCGAGGCACTCTTGAGCTTCAGAGCATCAATTATTGATTCTGATGGTGTTCTTCTTCAATGGAAGCCAGAGGCACCCCATCCTTGTAAATGGAAAGGAATAACATGTGATCCAAAAACCAAGAGAGTGATATATTTGAGTCTTCCTTATCACAAACTTAGTGGATCGCTATCCCCCGAACTTGGAAAGCTTGACCACCTAAAAATTTTAGCTCTTCATGACAATAACTTTTATGGGACAATTCCATCAGAATTAGGGAATTGCTCACAGTTGCAGGGAGTGTTCCTGCAGGGTAATTACTTTAGTGGGTTCATTCCCAATGAATTAGGGAATCTTTCGGCACTTAAAAACTTAGACATTTCAAGTAACTCACTCGGTGGAAATATTCCCATCTCGCTCGGGAAGTTGAGCAAGCTTATTAGTTTAAACGTGTCTGCCAATTTTCTGGTTGGATCAATTCCAAATGTTGGCGTGCTACTCAACTTCTCGGAAAGCTCATTTCTTGGAAACCGTGGCTTGTGCGGGAAGCAAATAAATGTTATGTGCAAAGATGACAAAAAGGGACCTGAAACTAATGAGTCACCATTCTCAGTGGAAAATCAAATTGGGAAGAAGTACTCTGGCCGACTACTTATAAGTGCTTCGGCAACTGTGGGTGCTTTACTGCTGGTTGCCCTAATGTGTTTCTGGGGTTGCTTTCTGTATAAAAAGTTCGGCAAAAATGACAGTAAAGGTCTAGTGCTGGATGGTTGTGGAGGTGCTCGTGCTGCGGGTGTAATGTTTCATGGAGACTTGCCATACGTATCTAAAGATATTATTAAGAAATTTGAGACACTGAATGAAGAACACATAATAGGATGTGGGGGCTTTGGAACCGTGTACAAGCTTGCAATGGATGATGGCAATGTTTTTGCCTTGAAAAGAATTGTAAAATTGAATGAGGGCTTTGATCGTTTTTTTGAGAGAGAGCTCGAAATTCTTGGAAGCATTAAGCACAGGTTTCTTGTGAATTTGCGAGGATATTGCAATTCTCCTACATCAAAGCTGTTAATTTATGATTTCCTTCCTGGAGGCAGCCTTGACGAGGCACTACACGGCCTCCGTACTGAATTGTCTGAGCAACTAGACTGGGATGCACGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCATATTTGCATCATGATTGCTCCCCGCGGATAATTCACCGAGACATAAAATCAAGCAACATTTTACTTGACGCTAATTTGGAGGCTCGAGTTTCTGACTTTGGACTTGCGAAACTTTTAGAGGATGAAGAATCACACATCACGACTATTGTTGCAGGAACATTTGGTTATCTGGCTCCTGAGTATATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTATACAGTTTTGGGGTATTGGTACTTGAAGTGTTGAGTGGCAAACGTCCCACAGATGCTTCATTCATTGAGAAGGGGCTAAACATTGTTGGTTGGTTAAACTTTCTAGTCACAGAGAATCGACAACGAGAAATAGCTGACTTACAGTGCGAGGGCATGCAAGCAGAGAGCTTGGATGCATTGCTATCGGTTGCCATCCAATGTGTTTCGTCGAATGCAGAGGATCGACCAACCATGCATAGGGTAGTCCAGATATTGGAATCTGAGATTATGACTCCATGCCCAAGTGATTTCTATGATACAGATTAA 1956 42.08 MLFWLLVAYPQGTVSFFLQQLVVTRLLYVQESHSCIWYLRWFVVIVLCLTGVTMGFCTVKWQWLLILHIVPLCMLMSRSRGISSDGEALLSFRASIIDSDGVLLQWKPEAPHPCKWKGITCDPKTKRVIYLSLPYHKLSGSLSPELGKLDHLKILALHDNNFYGTIPSELGNCSQLQGVFLQGNYFSGFIPNELGNLSALKNLDISSNSLGGNIPISLGKLSKLISLNVSANFLVGSIPNVGVLLNFSESSFLGNRGLCGKQINVMCKDDKKGPETNESPFSVENQIGKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDSKGLVLDGCGGARAAGVMFHGDLPYVSKDIIKKFETLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRFLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHGLRTELSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIADLQCEGMQAESLDALLSVAIQCVSSNAEDRPTMHRVVQILESEIMTPCPSDFYDTD 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32138040 32146225 - CrPI670011_11g020360.1 Cre11g2036 513781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2036 651 Pfam Leucine rich repeat N-terminal domain 83 122 IPR013210 -
Cre11g2036 651 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 82 244 - -
Cre11g2036 651 Pfam Protein kinase domain 366 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2036 651 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 440 646 - -
Cre11g2036 651 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 337 439 - -
Cre11g2036 651 Pfam Leucine Rich Repeat 200 221 IPR001611 GO:0005515(InterPro)
Cre11g2036 651 Pfam Leucine Rich Repeat 151 173 IPR001611 GO:0005515(InterPro)
Cre11g2036 651 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 238 637 IPR050647 -
Cre11g2036 651 Gene3D Ribonuclease Inhibitor 82 269 IPR032675 -
Cre11g2036 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g2036 651 ProSiteProfiles Protein kinase domain profile. 364 640 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2036 651 SUPERFAMILY L domain-like 83 250 - -
Cre11g2036 651 ProSitePatterns Protein kinases ATP-binding region signature. 370 396 IPR017441 GO:0005524(InterPro)
Cre11g2036 651 Gene3D Transferase(Phosphotransferase) domain 1 440 642 - -
Cre11g2036 651 Gene3D Phosphorylase Kinase; domain 1 342 439 - -
Cre11g2036 651 SUPERFAMILY Protein kinase-like (PK-like) 352 635 IPR011009 -
Cre11g2036 651 SMART serkin_6 364 640 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g2036 Cre-Chr11:32138040 Cre11g2123 Cre-Chr11:32932392 1.70E-82 dispersed
Cre07g1493 Cre-Chr7:30152885 Cre11g2036 Cre-Chr11:32138040 1.90E-226 transposed
Cre11g2036 Cre-Chr11:32138040 Cre02g2149 Cre-Chr2:35080213 6.70E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64573 PF00069 Pkinase 1.10E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2036 - - - 0.0