Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2040 ATGGCAACCTCCGTCATCGCTTCTTCTCTCACCCTCAAACCATCTAATTTCGCCGTCCAGAGATTGGCGGCTCATCAATGCCGCCGTGATCTAATTCCTTCACTCGCAAGGACTTCTTCTTCCTTCAGAGTCGAGGCCAGCGGCGGCAAGAAAATCAAGACCGATAAACCTTACGGAACCGGCGGCGGCATGAACTTGAGGAACGGCGTTGATGCATCCGGGAGGAAGCCGACGGGCAAAGGAGTGTACCAATATGTGGACAAGTACGGTGCCAATGTTGACGGATACAGTCCTATCTACAACACTGATGAATGGTCTCCAACCGGTGATGTATATGCTGGGGGTATAACTGGGCTGGCTATTTGGGCCGTGACCCTTCTGGGCCTGCTTGCTGGTGGGGCCCTTTTAGTCTACAACACAAGTGCTCTGGCCCAACCAACTTCTCAAGATTTGGTTTCAAATTATACCAGCTTAGCGAGACCGAAGGACTTCAATGATTTCAAGGATGATCCAAAACGTTGTCTTCAGGGATTGGGAGCAAAGAAGCCGGTTCTTACTGTCTTCATCACATCTAGCTCGCGCCTAACTAACGAAAAAGGCGGAATTGTTTGCTTCTAA 618 50.16 MATSVIASSLTLKPSNFAVQRLAAHQCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGTGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALAQPTSQDLVSNYTSLARPKDFNDFKDDPKRCLQGLGAKKPVLTVFITSSSRLTNEKGGIVCF 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32168155 32172737 + CrPI670011_11g020400.1 Cre11g2040 513785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2040 205 PANTHER PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC 1 145 IPR006814 GO:0009523(InterPro)|GO:0009654(InterPro)|GO:0015979(InterPro)|GO:0042651(InterPro)
Cre11g2040 205 Pfam Photosystem II 10 kDa polypeptide PsbR 47 144 IPR006814 GO:0009523(InterPro)|GO:0009654(InterPro)|GO:0015979(InterPro)|GO:0042651(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2040 K03541 - - mdm:103445766 219.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1436 Cre-Chr7:29422155 Cre11g2040 Cre-Chr11:32168155 1.00E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g965 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01586 Cam11g1653 Cec11g1681 Cco11g1678 Clacu11g1810 Cmu11g1624 Cre11g2040 Cone6ag0288 Cone9ag0323 . . . . . . Blo07g01000 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004437 0 2 1 0 1 1 1 1 1 1 2 2 1 1 1 1 2 2 1 2 1 1 2 2 2 2 1 3 1 1 40