Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2045 GTTGGTAGGTTTTCATTTCCGTCGTTCAACAACATATTCGAAAAAAGGAGACCTGATTATGAAGCTGCCACGCGTGATTCGCCGGGGGGAGTCCATTCGCCGGGCGTTGCTGAGTTGTGGAGCTCGCTGGAGCGTGAGAATTTGGCCGAGATGCACAGTCCGGAGAAATTGGATGGCGATTATTCTGCCACTGCGGACAGCAACGTCTCGGCTGAATTGGAGACTTCCATTAGTCCCAATGGTGATCTCCAGGAAGGAAATGATGGTGAAAATAAAAACATAGGAAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTCGACTCCAAAGCTGATGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTTGATCGTCTTACTACAGAATTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAATGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGAACCATACAGCGAAGAGTGGATAACATAGATCGGGCAATCTCGATGGGCAATCTACCAGGTACTCGTTCCTCTCAAAATTCCTCCCAGCTTTAA 615 45.04 VGRFSFPSFNNIFEKRRPDYEAATRDSPGGVHSPGVAELWSSLERENLAEMHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPGTRSSQNSSQL 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32226945 32233250 + CrPI670011_11g020450.1 Cre11g2045 513790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2045 204 PANTHER SNARE-ASSOCIATED PROTEIN SNAPIN 69 201 IPR017246 GO:0000149(PANTHER)|GO:0006886(InterPro)|GO:0007040(PANTHER)|GO:0008021(PANTHER)|GO:0008333(PANTHER)|GO:0016079(PANTHER)|GO:0031083(PANTHER)|GO:0031083(InterPro)|GO:0032418(PANTHER)|GO:0099078(PANTHER)|GO:2000300(PANTHER)
Cre11g2045 204 MobiDBLite consensus disorder prediction 52 94 - -
Cre11g2045 204 MobiDBLite consensus disorder prediction 63 94 - -
Cre11g2045 204 Pfam Snapin/Pallidin 99 183 IPR028119 -
Cre11g2045 204 Coils Coil 126 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2045 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g987 . . . . . . . . . . Cma01g01299 Cma09g00745 . . . . Cpe02g00631 . . . . . . . Cla11g01591 Cam11g1659 Cec11g1687 Cco11g1683 Clacu11g1816 Cmu11g1629 Cre11g2045 . . . . Lsi04g01870 . . Cme07g00760 . . . . . . . . . Cmo01g01354 Cmo09g00737 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003765 0 7 1 1 1 0 2 0 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 7 1 43