Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2073 ATGACGTCAACTGTTGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGCGAATCCGATGAAGGAAAAGTTGTTCGAGAAGTCTGCGCAAATGGGGTCTGCATTAAAACAACAGAAGTAGAAGCAAAGCTTGATGAGGGAAATATCCAAGAGGCAGAATCTTCACTACGGGAAGGGTTATCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGTAATGTTGAAGGTGCTCTACGTGTGTTTGATGGCATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTGCGTTACTGAGAAGACGCCTCCAAAAAAAGGACGTGCTCGCTCTGAATCTCAACATGCAGTTTCGCAGCATGCTGCAAACCTTGTTCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAGCTGAGGCTGCTGATGAGTGTACTAGTGTACTTGATGCTGTAGAGAAGATATTCCACCAAGGAATTCCTGATGGGCAAGTGGATAGTAGATTGCAAGATACTGTCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTCCAGGAAGCAATATCTGCCTATAGACGTGCCCTCCTAAGCCAATGGAACCTCAATAATGAAACCTGTGCTAGGATCCAGAAAGGATTTGCTGTATTTTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCAAAAAATAATTTGGAAGAAGCAATTCTGCTTTTGATGGTTCTTGTGAAGAAATGTTACCTTGGTAAGATAAAATGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCCTTATGTAGTCAGACATCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTATCTCTTTGTTATTTTGCAGCAGGTCAGAATAAAGTTGCCTTAAATCTTCTGAGAAAGTCTCTACACAAACACGAGCAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTCGCGGCTGAAGGTGTTGGTTATGCGCAGCGGGCAATGAACAATTCTATAGAAAATGAAGAGCATTTAAAGGGTGTGGGTCTTCGTTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGGCTTCCTCTGACTTTGAGAGGTCCCGTCTTCAGTCAGAGGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTGGAGAGCAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAATATTCAGAATATCGGAATTTGAATGCTGCTCTGCAATATGCAAAGAAGTTTATTGATGAAACTGGTGGTTCTGTCTTAAAAGGCTGGCAGTTGCTCGCTCTTGTTTTGTCTGCCCAAAAGAGATTTTCAGAGGCTGAAGTGGTTACTGATGCTGCAATGGATGAGACCACAAAATGGGAGCAGGGACCACTTCTCAGACTCAAGGCAAAGCTGAAGGTCTCTCAATCATTACATATGGATGCTATTGAAACTTACCGTTATCTCCTTGCATTAGTTCAAGCGCAAAAGAAATCGTTTGGGCCTCTCCGAATTGTCCCTCAGGTTGAAGATGATAAAGTGAATGAATTTGAAGTGTGGAATGGTCTAGCCAATTTATACTCCAGCCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCAAGAGAGCTGAAGGAGTTCTCCCCAGAAGTACTACATACTGAAGGTCTAATGTGTGAAGGACGTGAGAAAATACAAGAAGCTCTAGCTGCTTACATTAATGCTCTCCTACTCGAACCGTCTTATGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCGAAAGCGGGCCCAGATGCATTGCCTATAGCGAGAAGCTTACTTTCAGACGCATTGAGATTAGATCCTACCAACCGTAAGGCTTGGTTTTACTTAGGGGTCATTCATAGGGATGAAGGACGAATGGCCGATGCCATAGACTGTTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGTATTCTCTAG 2127 43.49 MTSTVDEDDREPAMESGESDEGKVVREVCANGVCIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCVTEKTPPKKGRARSESQHAVSQHAANLVLEAIYLKVKSLQKLGRVAEAADECTSVLDAVEKIFHQGIPDGQVDSRLQDTVSQAVELLPELWKQAGCFQEAISAYRRALLSQWNLNNETCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMVLVKKCYLGKIKWDPSVMEHLIFALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLSLCYFAAGQNKVALNLLRKSLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAMNNSIENEEHLKGVGLRLLGLCLGKQAKMASSDFERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKARELKEFSPEVLHTEGLMCEGREKIQEALAAYINALLLEPSYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEESDPIESFSSIL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32514084 32518674 - CrPI670011_11g020730.1 Cre11g2073 513818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2073 708 Gene3D Tetratricopeptide repeat domain 557 643 IPR011990 GO:0005515(InterPro)
Cre11g2073 708 Gene3D Tetratricopeptide repeat domain 291 553 IPR011990 GO:0005515(InterPro)
Cre11g2073 708 SUPERFAMILY TPR-like 512 697 IPR011990 GO:0005515(InterPro)
Cre11g2073 708 PANTHER PROTEIN NPG1 13 706 IPR043376 -
Cre11g2073 708 Gene3D Tetratricopeptide repeat domain 647 704 IPR011990 GO:0005515(InterPro)
Cre11g2073 708 ProSiteProfiles TPR repeat profile. 666 699 IPR019734 GO:0005515(InterPro)
Cre11g2073 708 MobiDBLite consensus disorder prediction 1 22 - -
Cre11g2073 708 SMART tpr_5 316 349 IPR019734 GO:0005515(InterPro)
Cre11g2073 708 SMART tpr_5 596 629 IPR019734 GO:0005515(InterPro)
Cre11g2073 708 SMART tpr_5 562 595 IPR019734 GO:0005515(InterPro)
Cre11g2073 708 SMART tpr_5 666 699 IPR019734 GO:0005515(InterPro)
Cre11g2073 708 SMART tpr_5 472 505 IPR019734 GO:0005515(InterPro)
Cre11g2073 708 Gene3D Tetratricopeptide repeat domain 39 267 IPR011990 GO:0005515(InterPro)
Cre11g2073 708 FunFam NPG1 553 702 - -
Cre11g2073 708 Pfam Tetratricopeptide repeat 39 91 - -
Cre11g2073 708 Pfam Tetratricopeptide repeat 650 693 - -
Cre11g2073 708 SUPERFAMILY TPR-like 195 492 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0501 Cre-Chr5:4473052 Cre11g2073 Cre-Chr11:32514084 1.10E-164 dispersed
Cre08g1597 Cre-Chr8:28469092 Cre11g2073 Cre-Chr11:32514084 3.00E-149 dispersed
Cre11g2073 Cre-Chr11:32514084 Cre07g0485 Cre-Chr7:2672830 2.10E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2073 K21843 - csv:101206641 1340.1