Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2125 ATGCAACTCCAAGGAAATAAACGTGGCCAATACACAACCACTTCAGCTAAGGCAGGGCAACTTACCCTCTCCCCACGGGCCTCTGCTGCCGAGTACTTGAATGAAAGAGCACCCATAAACAAAAAACTTTCATCATCTTCCATCCGTGTAATGGGCTCCTCCTCCTCTTCCCAGAGATCAGATGGCATCAAAGAGTCTGGCACCGTGGATTACAAATCTCTAAGCGATGATGAATGGAAGAAGCGGCTCACAGACCAGCAGTTTTATATTACCCGTCAGAAGGGAACTGAGAGAGCTTTTACCGGTGAGTATTGGAACACCAAAACGCCAGGGATATACCACTGCATATGTTGCGATACGCCACTATTTGAATCATCTACTAAATTTGACAGTGGAACTGGTTGGCCATCATATTACCAGCCTGTTCGTGATAATGTCAAATCCAAGCTAGACCTGTCCATCATTTTCATGCCTCGAGAGGAAGTTCTTTGTGCTGTTTGTGATGCTCATCTGGGCCATGTATTTGATGATGGACCGCCACCAACTGGGAAACGTTACTGCATCAATAGTGCTGCGCTGAAATTGAAGCCGAAACTGAGGATTCTCGAGATGTACATGTTTATTGTGCTGCAAGAAAATAATTGTACCTCTCGTGTCTTTGTTCAACACGCTAGACTCCTGTCTGGACACATTGGGTCTGAGCTTTGA 708 45.76 MQLQGNKRGQYTTTSAKAGQLTLSPRASAAEYLNERAPINKKLSSSSIRVMGSSSSSQRSDGIKESGTVDYKSLSDDEWKKRLTDQQFYITRQKGTERAFTGEYWNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVRDNVKSKLDLSIIFMPREEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAALKLKPKLRILEMYMFIVLQENNCTSRVFVQHARLLSGHIGSEL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32947369 32948906 - CrPI670011_11g021250.1 Cre11g2125 513870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2125 235 MobiDBLite consensus disorder prediction 44 68 - -
Cre11g2125 235 Pfam SelR domain 78 197 IPR002579 GO:0033743(InterPro)
Cre11g2125 235 MobiDBLite consensus disorder prediction 1 22 - -
Cre11g2125 235 NCBIfam peptide-methionine (R)-S-oxide reductase MsrB 74 198 IPR002579 GO:0033743(InterPro)
Cre11g2125 235 SUPERFAMILY Mss4-like 74 198 IPR011057 -
Cre11g2125 235 PANTHER METHIONINE SULFOXIDE REDUCTASE 36 197 IPR028427 GO:0005737(PANTHER)|GO:0006979(InterPro)|GO:0016671(InterPro)|GO:0030091(InterPro)|GO:0033743(PANTHER)
Cre11g2125 235 FunFam Peptide methionine sulfoxide reductase MsrB 68 201 - -
Cre11g2125 235 MobiDBLite consensus disorder prediction 44 64 - -
Cre11g2125 235 Gene3D Peptide methionine sulfoxide reductase. 66 207 - -
Cre11g2125 235 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 76 198 IPR002579 GO:0033743(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2125 K07305 - - csv:101203253 294.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0685 Cre-Chr5:6023342 Cre11g2125 Cre-Chr11:32947369 2.20E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g15 . . . . . . . . . . . . . Car09g00602 . Cpe06g00532 . Bhi09g03579 . . . Hepe01g1475 . . Cla11g01675 Cam11g1742 Cec11g1767 Cco11g1768 Clacu11g1900 Cmu11g1711 Cre11g2125 . Cone9ag0242 . . Lsi04g01969 Csa04g02248 . . . . . . . . . . . . Cmo09g00664 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006816 2 4 1 7 1 0 1 1 0 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 35