Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2136 ATGTACATGGCTCGATTCCTCGCCGTCTTTCTTTTCTTTTCTCTCGTTTCCGCCGTCCCTCAGCTGCCGGCCGACGAAGTTGAAGCGTTAAAGGAGATCGGAAAGGCATTGGGGAAGGTGGACTGGAATTTCACGGCGAATCCATGCGGCGGTTTGGGTAGCGGTTGGATAACCAATTCTTTCGACACGGGGTTTGTTAATAATCTCACATGCAACTGCACCTTCCAGAATAACTCCGTTTGTCACGTCATTAAAATCCGTCTAAGGTCACAGAACCTTCAAGGCATTCTGCCGCCACAACTAGTGAGGCTGCCTTACTTGGAAGAACTCGATCTTGCCCGCAACTATCTCAGCGGCCCAATTCCTCCAGAATGGGGTGCTTCAAAGCTTGTCAACATTTCCCTTCTTGGAAATCGATTGACGGGTCCAATCCCAAAGGAGATTGGAAACATCAGCACTCTTATAGAGTTGATCCTTGAAGTTAATCAGTTGTCTGGAAGTCTGCCTCCAGAACTTGGAAAGCTGACCAGGTTATCAAGATTACTTCTTTCCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGGAGCGATAACCACATTGACGGACCTTCGAATTAGTGATAATCACTTCACAGGGTCAATACCCAAGTATATTCAGAATTGGCCGAATCTTGGAAAACTAGGTATTCAGGCAAGCGGGCTGAGTGGACCAATTCCTTCTGAAATTGGACTTCTGACAGAATTATTGGATCTGAGAATCAGCGACTTGAATGGAGGTTCATCGTCCTTTCCACCCCTTAATTCTTTGACAAAATTGAAAACCCTGATATTGAGGAGCTGCAATATAGTTGGGATGCTGCCTGACAATCTTGATGGGTTGGAAAACGTGCAAACCTTAGACTTTAGCTTCAACAAAATTAGTGGACCAATACCTGCCGGCTTTGAAGCTTTGAAGAAAGTGGATAGAATATATTTAACTGGAAACATGCTAACTGGAGCTGTGCCTCTTTGGATGCTGCAGGAGGGAGAAAACATTGATCTCTCTTATAACACATTTACTGAGACAGATTTTCAGGCCTTGGGTTGTGAAGCACGAAGTTTAAACCTGTTCGCGAGCTCTTCACAGGACAATACTTCTGGAACAGTTTCATGTTTAGCGGGCACATGTGACAAAACTTGGTACTCTCTCCATATCAATTGCGGTGGGAAGGAAGATTTAATAAACGGAACAATCAGGTTTGATGGAGACACAAACACGGGGAAATCATCATTGTTTTTTCAAGGTGGAGCAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGATGATGATCGCTCAACAGACGACTTCATTGCATTAAGTCCACCTGATCTCCCAATGAAAAATCTTGGATTGTACACCAGTGCACGGATTTCTCCCATCTCTCTTACTTATTATGCGTATTGCATGGGTAATGGAAACTACACAGTAAGCCTACATTTTGCTGAGATAGAGTTTAGTAATGACAAATCATACAAAAGCCTTGGCAGACGCATATTTGATGTCTACGTTCAGAGAGAGCTGGTGTTGAAGGATTTTAATATTGCAGAGGCAGTAGGTGATGTTGGCAAACCTCTTGTAGTGAAATTCACTGTTTCTGTGACTAATGGTACTATAGAGATCCGCCTATTTTGGGCGGGGAAGGGGACAAATGCAGTCCCTGTAAGAGGAATTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCTGACTTTGATCCACCATCAGAAGGTGGAAATGCCATATCCGCTGCAGTGGTCGGAATTGTGGCTGCTGTGGTCTTGGTTATCATCTTGCTTCTTGGGGTCTTGTGGTGGAGAGGCAGCCGAAGAACGAAAAGCACACTTGAACAAGAGTTGAAGGATCTTGATCTCGGAACAGGATCATTTTCATTAAGACAAATCAAAGCTTCCACTAACAATTTTGATGTTGCCAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGCGTTCTTGCTGATGGCAGTGTAATTGCAGTGAAGCAACTTTCTTCAAAGTCAAAGCAAGGAAATCGTGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAGATCAACTTTTGCTAATATACGAGTATCTGGAAAATAACAGTCTTGCTCGTGCCTTATTCGGACCTGAAGAATATCAACTGAAATTGGATTGGCCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAAAGGTTTAGCATACCTTCACGACGAGTCAAGACTAAAGATTGTTCACCGTGACATCAAAGCTACCAATGTTCTTCTCGACAAAAATCTAAACCCGAAGATTTCCGACTTTGGTTTGGCTAGGCTAGATGACGAAGGAAATACACACATCAGCACACGGGTTGCCGGAACCTATGGATATATGGCACCAGAATACGCCATGCGAGGGTACTTAACTGACAAAGCAGACGTTTATAGTTTTGGTGTGGTAGCATTGGAAATAGTCGGTGGTCGAAGCAACACAAGTTTTGGAACCAAGGATGATTGCTTATATCTTCTTGATTATGCTAACGTTTTAAAAGAGAGGGGGAATTTACTAGACCTTGTCGATCCACGGTTAGGCTCTGAATTCAACAAGACAGAGGCAACGACGATGATCACTATCGCCCTTCAATGCACGAACATCAGTGCTGCAGACAGACCCTCCATGTCAACAGTAGTAGGCATGCTGGAAGGGAAGATTGGTGTAGAGGAGTTGGTTTCAGATCCAAATATCTCAAAGCAAGATGTGAATGCTATGTGGAGCCATATGTACCACCAGAAAGTGAAAACAATGGGCGAGAGCGAGATACAAAGTATGTTGACATGTGAGAGCGAGAGCGAGACCCAAAGTATGTTGATAGATGGACCATGGACTGATTCTTCAATTACTGATAGTGATTGCCTTCCCATCATGGCTGATTCTAGATACTTGGAGAATAGGATTTAG 3042 43.52 MYMARFLAVFLFFSLVSAVPQLPADEVEALKEIGKALGKVDWNFTANPCGGLGSGWITNSFDTGFVNNLTCNCTFQNNSVCHVIKIRLRSQNLQGILPPQLVRLPYLEELDLARNYLSGPIPPEWGASKLVNISLLGNRLTGPIPKEIGNISTLIELILEVNQLSGSLPPELGKLTRLSRLLLSSNNFSGELPSSLGAITTLTDLRISDNHFTGSIPKYIQNWPNLGKLGIQASGLSGPIPSEIGLLTELLDLRISDLNGGSSSFPPLNSLTKLKTLILRSCNIVGMLPDNLDGLENVQTLDFSFNKISGPIPAGFEALKKVDRIYLTGNMLTGAVPLWMLQEGENIDLSYNTFTETDFQALGCEARSLNLFASSSQDNTSGTVSCLAGTCDKTWYSLHINCGGKEDLINGTIRFDGDTNTGKSSLFFQGGANWGFSNTGSFMDDDRSTDDFIALSPPDLPMKNLGLYTSARISPISLTYYAYCMGNGNYTVSLHFAEIEFSNDKSYKSLGRRIFDVYVQRELVLKDFNIAEAVGDVGKPLVVKFTVSVTNGTIEIRLFWAGKGTNAVPVRGIYGPLISAISVDPDFDPPSEGGNAISAAVVGIVAAVVLVIILLLGVLWWRGSRRTKSTLEQELKDLDLGTGSFSLRQIKASTNNFDVANKIGEGGFGPVYKGVLADGSVIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLYGCCIEGDQLLLIYEYLENNSLARALFGPEEYQLKLDWPTRQKICVGIAKGLAYLHDESRLKIVHRDIKATNVLLDKNLNPKISDFGLARLDDEGNTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGVVALEIVGGRSNTSFGTKDDCLYLLDYANVLKERGNLLDLVDPRLGSEFNKTEATTMITIALQCTNISAADRPSMSTVVGMLEGKIGVEELVSDPNISKQDVNAMWSHMYHQKVKTMGESEIQSMLTCESESETQSMLIDGPWTDSSITDSDCLPIMADSRYLENRI 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33047180 33061317 - CrPI670011_11g021360.1 Cre11g2136 513881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2136 1013 Gene3D Ribonuclease Inhibitor 192 261 IPR032675 -
Cre11g2136 1013 Pfam Protein tyrosine and serine/threonine kinase 659 926 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g2136 1013 Gene3D - 399 585 - -
Cre11g2136 1013 SUPERFAMILY L domain-like 74 336 - -
Cre11g2136 1013 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 626 732 - -
Cre11g2136 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 23 259 - -
Cre11g2136 1013 Gene3D Ribonuclease Inhibitor 36 191 IPR032675 -
Cre11g2136 1013 Pfam Leucine Rich Repeat 178 197 IPR001611 GO:0005515(InterPro)
Cre11g2136 1013 Pfam Leucine Rich Repeat 107 126 IPR001611 GO:0005515(InterPro)
Cre11g2136 1013 Pfam Leucine Rich Repeat 202 223 IPR001611 GO:0005515(InterPro)
Cre11g2136 1013 SUPERFAMILY Protein kinase-like (PK-like) 641 941 IPR011009 -
Cre11g2136 1013 Pfam Malectin domain 397 581 IPR021720 -
Cre11g2136 1013 Gene3D Phosphorylase Kinase; domain 1 621 732 - -
Cre11g2136 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase 733 940 - -
Cre11g2136 1013 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515(InterPro)
Cre11g2136 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 395 586 - -
Cre11g2136 1013 Gene3D Transferase(Phosphotransferase) domain 1 733 940 - -
Cre11g2136 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g2136 1013 Gene3D Ribonuclease Inhibitor 262 398 IPR032675 -
Cre11g2136 1013 SMART serkin_6 657 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2136 1013 CDD STKc_IRAK 663 930 - -
Cre11g2136 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 943 IPR051824 -
Cre11g2136 1013 ProSiteProfiles Protein kinase domain profile. 657 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g2136 Cre-Chr11:33047180 Cre11g2138 Cre-Chr11:33088320 4.60E-212 dispersed
Cre11g2136 Cre-Chr11:33047180 Cre11g2137 Cre-Chr11:33063050 0.00E+00 tandem
Cre01g0222 Cre-Chr1:1588716 Cre11g2136 Cre-Chr11:33047180 2.00E-136 transposed
Cre01g0260 Cre-Chr1:1934774 Cre11g2136 Cre-Chr11:33047180 3.00E-203 transposed
Cre03g0987 Cre-Chr3:8694909 Cre11g2136 Cre-Chr11:33047180 7.20E-205 transposed
Cre07g1372 Cre-Chr7:28615760 Cre11g2136 Cre-Chr11:33047180 7.60E-199 transposed
Cre11g0551 Cre-Chr11:2535035 Cre11g2136 Cre-Chr11:33047180 5.50E-68 transposed
Cre11g2136 Cre-Chr11:33047180 Cre07g1399 Cre-Chr7:28896595 1.90E-80 wgd
Cre11g2136 Cre-Chr11:33047180 Cre07g0641 Cre-Chr7:4204046 1.10E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64576 PF07714 PK_Tyr_Ser-Thr 1.90E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2136 - - - 0.0