Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2138 ATGGTCGGAACTTGGGACATGGATTTGGCTGTTCTTGTTTATGGCTTCCTGCTTTTGAACTGCTTCTTGGAATTTGGATCCCATGCCCAACCTCTGCCTGATCAAGAAGTGAGAGCCCTTCAAGCAATATCTGCAGAGCTAAGGAACTTAAACTGGAATGTTCACCAAAATTCTTGCATTAATGGTGATGGATTTTTCAATAGACCAATCCTTGGTACAGATATTATCAGAGAGGTTAATTGCACTTGCACCACTGTTTGCAGTGTCACTACCATCCGGCTAAAGGGTTTGAATCTAACTGGAACTCTGCCAGCAGCATTTGGAAATCTAACAAAGCTGCAAACAATAGATCTTACTCGCAATTTAATTTCTGGATCGATCCCTAGAGAGTTCGCTCAGATTCCTCTTGTTGATTTGTCCATGTTGGGAAATCGTCTCAGTGGCGAAATTCCTCCAGAAATTGGTGACATTGCTACACTTGAGCATTTGGTTTTGGAAGACAATCTCCTTGGAGGGAATCTTCCCGAAAGCCTCGGGCGATTGAGCCGCTTGCGAAGATTACTTCTTTCTGCAAATAATTTCAATGGAACAATTCCAGCATCGTATGGAAACTTGAAGAACTTGACTGATTTTCGGATAGATGGAAATGATGTATCAGGAAGGCTTCCTGAATTTATTGGCAATTGGACCAAACTAGAGAGACTGGATATTCAAGGAACTTCTATGGAGACCCCAATTCCTAGTGGCATATCTGACTTGAAAAACTTAACCCAATTGAGGATAACTGATTTGAAGGGACTGCCAACAAGTTTTCCTAATTTGACTCAATTGACATCTTTAGAAGAACTGATCCTAAGAAACTGCTTAATCCAGGATCAGATTCCTGGGTATATTGGATTGTTTAGTAATTTGAAAACTTTAGATCTAAGCTTCAATGAATTGAGCGGTCCAATTCCAGATACATTTCAGAATCTAGACAGAGTTACTCGGTTCATGTTTTTGACAAACAACTCATTAAGTGGCCAAGTACCAAGCTGGATCTTGAACAGTGAAAGGAGCATAGATTTATCTTACAACAATTTTACTGGGTCCCCTGTTTCAAGTTGTCAACAGTCTGATGTGAACTTGGTTTCAAGTTATTCAACTACAATGAATAACACTGTTGCTTGGTGCTTGAGGAAGGATCTCCCTTGCCCAAGAGAAACGCGATTTCATTCCTTGTTCATAAATTGTGGAGGACAAAGGATGGAGGTTGATGGTAATGAATATGAAGAGGATGTAACTCCAGGTGGCAAATCCAATTTCATTTCTTTCTCTGATAGATGGGCTTATAGCAGTACTGGTGTTTTCCTGGGAGATGAGAATGCTAATTACAGAGAAACAAGTAGCAATGCATCTATTTCGAGCATCTACCGAACCGCTCGACTCGCACCTCTTTCGCTCAAGTACTATGGACTTTGTTTAAGAAGAGGAAGTTACAATGTTAAGCTTCACTTTGCTGAAATAATGTATACTTCTGACCAAACATTCAGCAGCTTGGGAGAGCGCATATTTGATATCTCAATTCAAGGAAATTTGGTTCAAAAAGATTTTAACATAATGGAGAAAGCTGGTGGTGTTGGGAAGAGCTTCATTCTAGAAGAGCCTAATATTTTGGTCAATGGAACTACTCTTGAGATACACTTATATTGGGCTGGTAAAGGAACTACTGCCATTCCAGACAGAGGGGTGTATGGACCTTTGATATCTGGGATCACAGTCACACCAAACTTTGATGTGGAGACTGGAGGGCTGTCAGCTGGAGCTATTGCTGGCATTGTTGTTGGTAGTTTTGTGTTTGTTGTGTTGGTATTGGCTGTTCTTAGATGGAAAGGTTATTTGGGTGGAAAGGACACTGAAGACAGTGAATTGAAGGCCTTAGATTTACAGACAGGTTATTTCAGTTTGAGACAAATCAAAACAGCCACCAACAATTTCGACCCGACCTATAAAATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGTGTATTGTCTGATGGTACTTCGATCGCAGTAAAGCAACTATCCTCTAAATCAAGACAAGGAAACCGTGAATTCGTCACTGAGATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAATTATTGCTTGTTTATGAGTATCTAGAGAATAACAGTCTTGCCCGTGCTCTTTTTGGGGCGGAGGAGCACCGACTACACTTGGATTGGCCGATAAGAATGAAGATATGCTTGGGAATAGCAAAGGGATTGGCTTACCTTCATGAAGAATCTGTATTGAAAATTGTTCATAGAGATATAAAAGCTACCAATGTGTTACTTGATAAAAACCTGAATGCCAAGATTTCTGACTTTGGATTGGCTAGGCTTGATGAAGAAGAGAACACCCATATCAGCACAAGAATTGCTGGCACAATTGGTTACATGGCTCCTGAGTATGCAATGCGAGGCTACTTAACCGATAAAGCAGATGTTTATAGCTTCGGAGTTGTGGCTTTAGAGATTGTTAGTGGAAAAAGTAACACAAACTACAGGCCAAAAGAGGAATTTGTTTATCTTCTCGACTGGGCTTATGTTCTACAAGAGCAAGGAAACCTTCTTGAACTCGTTGATCCGAGTCTCGGCTCACATTACTCAAAAGAAGAGGTGATGAGGATGATTCATATAGCTCTCTTATGCACAAATCCATCTCCAACTCTTAGGCCATCTATGTCTTCAGTGGTTAGCATGCTTGAAGGAAAAATTGCAGTCCAAGCGCCGATCATAAAGCGCGGTGCAGTCGATCAAGATGCAAGGTTCAAAGCCTTTGAAAGACTGTCACAAGATAGCATAACAAGCATTTCAACATCATCACAAGGCATTCCAATGCAAAAAAGCATGTTGATTGATGGGCCCTGGATTGATTCCACTACTTCTTCTCATAACAAGGATGAAACTCAAGATTATTCTTCAACCACAAATCTCCTTTAG 3027 40.7 MVGTWDMDLAVLVYGFLLLNCFLEFGSHAQPLPDQEVRALQAISAELRNLNWNVHQNSCINGDGFFNRPILGTDIIREVNCTCTTVCSVTTIRLKGLNLTGTLPAAFGNLTKLQTIDLTRNLISGSIPREFAQIPLVDLSMLGNRLSGEIPPEIGDIATLEHLVLEDNLLGGNLPESLGRLSRLRRLLLSANNFNGTIPASYGNLKNLTDFRIDGNDVSGRLPEFIGNWTKLERLDIQGTSMETPIPSGISDLKNLTQLRITDLKGLPTSFPNLTQLTSLEELILRNCLIQDQIPGYIGLFSNLKTLDLSFNELSGPIPDTFQNLDRVTRFMFLTNNSLSGQVPSWILNSERSIDLSYNNFTGSPVSSCQQSDVNLVSSYSTTMNNTVAWCLRKDLPCPRETRFHSLFINCGGQRMEVDGNEYEEDVTPGGKSNFISFSDRWAYSSTGVFLGDENANYRETSSNASISSIYRTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMYTSDQTFSSLGERIFDISIQGNLVQKDFNIMEKAGGVGKSFILEEPNILVNGTTLEIHLYWAGKGTTAIPDRGVYGPLISGITVTPNFDVETGGLSAGAIAGIVVGSFVFVVLVLAVLRWKGYLGGKDTEDSELKALDLQTGYFSLRQIKTATNNFDPTYKIGEGGFGPVYKGVLSDGTSIAVKQLSSKSRQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGAEEHRLHLDWPIRMKICLGIAKGLAYLHEESVLKIVHRDIKATNVLLDKNLNAKISDFGLARLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSHYSKEEVMRMIHIALLCTNPSPTLRPSMSSVVSMLEGKIAVQAPIIKRGAVDQDARFKAFERLSQDSITSISTSSQGIPMQKSMLIDGPWIDSTTSSHNKDETQDYSSTTNLL 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33088320 33097405 + CrPI670011_11g021380.1 Cre11g2138 513883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2138 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g2138 1008 Pfam Protein tyrosine and serine/threonine kinase 664 929 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g2138 1008 SUPERFAMILY Protein kinase-like (PK-like) 643 936 IPR011009 -
Cre11g2138 1008 Pfam Malectin domain 407 585 IPR021720 -
Cre11g2138 1008 Gene3D Ribonuclease Inhibitor 264 381 IPR032675 -
Cre11g2138 1008 Pfam Leucine Rich Repeat 303 325 IPR001611 GO:0005515(InterPro)
Cre11g2138 1008 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515(InterPro)
Cre11g2138 1008 Gene3D - 405 590 - -
Cre11g2138 1008 MobiDBLite consensus disorder prediction 984 1008 - -
Cre11g2138 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 265 - -
Cre11g2138 1008 Gene3D Phosphorylase Kinase; domain 1 628 734 - -
Cre11g2138 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase 735 942 - -
Cre11g2138 1008 CDD STKc_IRAK 665 932 - -
Cre11g2138 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 955 IPR051824 -
Cre11g2138 1008 SUPERFAMILY L domain-like 80 363 - -
Cre11g2138 1008 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 628 734 - -
Cre11g2138 1008 ProSiteProfiles Protein kinase domain profile. 659 941 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2138 1008 Gene3D Ribonuclease Inhibitor 74 263 IPR032675 -
Cre11g2138 1008 SMART serkin_6 659 930 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2138 1008 Gene3D Transferase(Phosphotransferase) domain 1 735 943 - -
Cre11g2138 1008 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 590 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2261 Cre-Chr6:30521439 Cre11g2138 Cre-Chr11:33088320 3.00E-85 dispersed
Cre07g1372 Cre-Chr7:28615760 Cre11g2138 Cre-Chr11:33088320 0.00E+00 dispersed
Cre07g1399 Cre-Chr7:28896595 Cre11g2138 Cre-Chr11:33088320 4.10E-87 dispersed
Cre09g2041 Cre-Chr9:39497415 Cre11g2138 Cre-Chr11:33088320 8.00E-06 dispersed
Cre10g2306 Cre-Chr10:37307713 Cre11g2138 Cre-Chr11:33088320 1.90E-92 dispersed
Cre11g0551 Cre-Chr11:2535035 Cre11g2138 Cre-Chr11:33088320 4.50E-70 dispersed
Cre11g2136 Cre-Chr11:33047180 Cre11g2138 Cre-Chr11:33088320 4.60E-212 dispersed
Cre11g2138 Cre-Chr11:33088320 Cre11g0731 Cre-Chr11:4424489 2.10E-71 dispersed
Cre11g2137 Cre-Chr11:33063050 Cre11g2138 Cre-Chr11:33088320 1.10E-202 tandem
Cre11g2138 Cre-Chr11:33088320 Cre11g2139 Cre-Chr11:33100759 1.5e-311 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64578 PF07714 PK_Tyr_Ser-Thr 8.80E-50 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2138 - - - 0.0