Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2165 ATGAATGAATGTGGTTTATGTGTGCTGTTTGATGGAGTTGGATTGAGGGGAAAGATGAGATTCATGCGGTTTCTGACAATTGTCCTTATGAGATTTCTGCAAATGGGTATGAATGGGGTTTTTAAAATTTTGTTTTCTTCTTCTCGTTTGTCGGATTTCTGGAAACTGGGAAGAGAAATAGAGGCGGGGCAATGTAAGAAGTTGGCGTTTCTGTGGACAATTAATGATGATGGCTTTGAGGGATCTGCAAGCGAAGACATTATTTTTAGGGAGGTTTTCTTTGGCAACAGCTCTAGCCATTCCAATAGGAGGTGTCCTCACAAGGTTGTTAGTTATGAATGCGGGCCCTGTAAAATTAATGATGCATCTTTATGTTCAAGTAGTGAACTCTCAACAGTGTCTAGTTATTCATACTCAAGAAATATAAAGCTTGATGAATGTTACAATGCTACGGAGAATATTAGGACCAGTTCTGCACCTAATAGTCTGCCATGCAAATGGACTTCAGTGGAAGGCGACAACGTGAATGCAAGTGCTAAACGAATAAAACTGTCAACTGATGAAGCCTCTGATTCTGTACCCAATCTAGTTAAGGTTATGAAATCATCAGATGGTATAAGAGAACCTGTTTCCACTAATTGCTGTCCAGCTGAGGACTGTGATTCTGAATCATTTACATTCCACATTGTAGAATCTTCTAGACAGGGAATTATATCAAGTTGCTATCTGCTTAAGCACTTTGTTGAAAGGGACAATAATCTGGGTGATCCCGATGCCTCCAAACGAACATCACTGAATTTAGAAGGTAACGATGAACCCAATTTGGTGAATGAAGTTAGTGCTTCGCCTGTTTCCCAAGAGAGCTCCATGACCAGGCTGTTGGTAGCAAGTCCTTCTGATACACTCAAAGAGAAGTTTGGATCTCCACTACATCTAGAGGTAGGACAAATGAAATTTCTATGTCCAGAACCGGATACTTCCTTGAAGACAGATTTGAGTAGGGATCCCCGTCCACTTCTCCACTACCATGTTGTTCACCTGTTTATCGCAGCTGGATGGTCTATTGAAAGGGTCAAAAGACCTTGCCGGCGTTATATGGAAACGATGTACAGGTCACCCCAGGGAAGAGCCATTCGTGAATTTTCCAAGGCTTGGAGGGTTTGTGGTGAACTTCTGTTTGCTGATAAGTGTAGTTTTGCAAAGAAAGTTGACAGCAGAGAATGGACTGGCATTCATCAATTCTTATTTGATCTTTCTGACACATTGTTACAGGTTGGGAAGGAAATGAATCAATTAGGGGCTACAACTTCATTGGCTCATTGCTGGGCTATTCTAGATCCCTATGTGGTGGTTGTGTTCATTGACAGAAAGATCGGTACCCTTAGGAAGGGAGATTTAGTTAGAGCTACCTGTAGTATTGGGGTTAATGGGAACAATAAGACCGATACTTTTGTGACATTAAAAAATGAAGACAGTAGTATTTGTAACCTATCTGCTGACAAAAACCCGTCACCACCACATGATAATTCACCATCTGCCAAGAGTGCATTGACAGAGGCGGCATTAAAAGATCTTGATGGGGGCAATTGTGCTTTTGATGAGCAAATCTGTGATACAAGTTTCTCCAATTACTATGGGCATACAGAAGATGGAACAATGAAATTTCCGACAAAGGTGTCTAATTATGACCTCAATTTGGGGAACAGTCTGAATTGCATGGGCAGTCATTGTGATGAACCTGGAAACAAGATAGACACTGAGGATTTAACTTCATTACCTGCTTATTTTTCAGGCTCCACCTGCAAACCTAGATGTCTGGCTGATGGTCCTGTTCCATCTGGAAATTCAGATAATGTTGTCAGAATTTCTGGCCTTACATCTCCCGATGAGGATAGCACTTTGTGTTGTTCGGATGAACAGAGCTCTGAAAATCATGTTGAAAAGCCTAATGAAATGGTGAAAAATGTACTAACGTGTTCCCTAGTAGAAGAAAAAAAGGTGGAAGTCCCACTTGATGATAAGGTGGAGAATAATTTGGAAGAATCTCTGAATGACTGTCCAAACTATACAAGTGACGATTTATCTCATTCTTGTGCCTCAGGGGTTGTACAGAAGTCTTCACAAAATGAAGAAGGTGGGCTGCACTTTTCAGGTTCAATGTTCAAAACAGAGAATAAAGTTTCTGCTACACATTCTATTTTGAAGAAGAAAGGACGTCGAAAGTGTAAAAAGATATCTGAAATTAAACCTACCTTGCCACCTCATATTGATATTGTGAGTGTGACTCCTGGAAAGAAAACTGAGTTGTGGGATATTGATGGGAATTGCTCTCAGTTAGATATGATAGAAGACCAGAAGTCCCATATAGCTGATACTAAAAACGTGGAGGGGCACGAGAAGAGCTTGTCTCTCAGTCCTGTTTCATGCCATTCTGAGAGGAAAGGTTCAAAGTTCAATAAGAATTTTGACAGTCTTAAAGGTTCAAAAACCAGAAAGAAGAAATCGAATGAATGTCAAATTGAAGATGACGATCTATTAGTTTCAGCCATTATTAGAAACAAAGATGTCAGTTCAAGTGCTGCTGGATCTTCCCATGTAAGGAAATACTTAAAATCTAGAGCAAAAATGAACCGCAAAAGACAAAAGAGTAGTTGTAAGTTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGCAAGTGGTATGCCATAGGGGCTAGAACAGTGTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCGAATGATATAATCCAATACCAAAGCCCTAAGGATGACAGTGTAGTTAAATATGGTAGAATCACTGGAGATGGCATCATCTGCAATTGCTGCGGTGAGCTACTCTCAATATCTGAATTTAAAAGTCACGCAGGTTTCAAATTTAATCGCCCTTGTTTGAATCTTTTCTTGGACTCTGGGAGGCCTTTCATGTTGTGCCAGCTTCAGGCCTGGTCAACTGAGTATAAGACAAGGAGAAGTAGGACCAGAACTGTTCAAGTTGATGAAGATGATCGAAATGATGATTCATGTGGGATTTGTGGTGATGGTGGAGAACTAATCTGCTGTGATAATTGCCCTTCTACATTCCATCATTCTTGTTTGTCAATTCAGGAACTCCCTGAAGGCAACTGGTATTGTTTAAACTGTACATGCCGGATATGTGGTGGTCTTGTGAATTATGAAGAGACTTCAAGTTCGTCTGATGCGCTAAAATGTTCTCAGTGCGAGCAAAAGTATCATGGGCGATGCCTGAAACAAAAAGACATCGATTCTGGAGTAGAAGCTCATGTTTGGTTTTGTAGTGGGAGTTGCCAGAAGATTTACACAGCTCTTCAATCACGACTTGGATTGATTAATCAGTTTGCAAATGGGTTTTCATGGATGCTTCTTAGATGCATTCATAACGACCAGAAAATTCTGTCTACCCCACGCTTAGCTATGATGGCAGAATGTAATTCCAGATTAGTAGTGGCTCTTACCATCATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGGACAGGAATTGATATGATACCACATCTGGTGTACAGCTGGAAGTCTAGTTTTCCTCGTCTGGACTTTCATGGATTTTACACTGTGATACTAGAGAAAGATGATGTGCTGCTATGCGTAGCTTCTATCAGGGTACATGGATCAGAAGTGGCTGAGATGCCCCTTATTGCAACTTGTAGTAAATATCGACGCCAAGGAATGTGTAGGCGTCTACTGAATGCTATTGAAGAGATGCTATTGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTGGAGACATGGACCGAAGGTTTTGGCTTTGTACCTGTGGAAAATGATGAGAAACAAAGTCTTCACAGGTTCAATTTGATGGTGTTTCCCGGAACAATACTCCTAAAGAAGGCTCTGTATTTAAGTGGCCCAAATACAGAGACAACAGAAGGAATTCATTCAGGAGTACAACTTGACACCGATACTAAACGACAATGCAATTCCAACGAAGCATGTCCTAGAATGGAAATAAAATGTTCAAAATATCAAGAATTGCAAGAACACAATCATGAAAAGATGATGGACGACCACGAAGGAAATCCAGCTCTTCCGATTGATTCATCTACGTTGCAGGTGGTTGAATCAAATGGAATGGATACTTCTTCAGGACAAAAGTCTGTTGAGTCAGTACCTCAACCTGATGGAAACTGTTGCACTGACATAGTTGGTGCCACAACCGAAACCCGCACGCACGAGGGGAAAGAGTCGTTAGAAGTAGAAGTTGGCGCAAAACGTGACATTCAGCTTTCAGAAGGAAAGAGCTGGGATGAAGGAGTCCATGCAGCCACGATGACAAGATTTGTAGAACCTGTTGTTCTAACTTAG 4416 40.92 MNECGLCVLFDGVGLRGKMRFMRFLTIVLMRFLQMGMNGVFKILFSSSRLSDFWKLGREIEAGQCKKLAFLWTINDDGFEGSASEDIIFREVFFGNSSSHSNRRCPHKVVSYECGPCKINDASLCSSSELSTVSSYSYSRNIKLDECYNATENIRTSSAPNSLPCKWTSVEGDNVNASAKRIKLSTDEASDSVPNLVKVMKSSDGIREPVSTNCCPAEDCDSESFTFHIVESSRQGIISSCYLLKHFVERDNNLGDPDASKRTSLNLEGNDEPNLVNEVSASPVSQESSMTRLLVASPSDTLKEKFGSPLHLEVGQMKFLCPEPDTSLKTDLSRDPRPLLHYHVVHLFIAAGWSIERVKRPCRRYMETMYRSPQGRAIREFSKAWRVCGELLFADKCSFAKKVDSREWTGIHQFLFDLSDTLLQVGKEMNQLGATTSLAHCWAILDPYVVVVFIDRKIGTLRKGDLVRATCSIGVNGNNKTDTFVTLKNEDSSICNLSADKNPSPPHDNSPSAKSALTEAALKDLDGGNCAFDEQICDTSFSNYYGHTEDGTMKFPTKVSNYDLNLGNSLNCMGSHCDEPGNKIDTEDLTSLPAYFSGSTCKPRCLADGPVPSGNSDNVVRISGLTSPDEDSTLCCSDEQSSENHVEKPNEMVKNVLTCSLVEEKKVEVPLDDKVENNLEESLNDCPNYTSDDLSHSCASGVVQKSSQNEEGGLHFSGSMFKTENKVSATHSILKKKGRRKCKKISEIKPTLPPHIDIVSVTPGKKTELWDIDGNCSQLDMIEDQKSHIADTKNVEGHEKSLSLSPVSCHSERKGSKFNKNFDSLKGSKTRKKKSNECQIEDDDLLVSAIIRNKDVSSSAAGSSHVRKYLKSRAKMNRKRQKSSCKLLLRSLGNGEKNYKDGKWYAIGARTVLSWLLDAGVISSNDIIQYQSPKDDSVVKYGRITGDGIICNCCGELLSISEFKSHAGFKFNRPCLNLFLDSGRPFMLCQLQAWSTEYKTRRSRTRTVQVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSIQELPEGNWYCLNCTCRICGGLVNYEETSSSSDALKCSQCEQKYHGRCLKQKDIDSGVEAHVWFCSGSCQKIYTALQSRLGLINQFANGFSWMLLRCIHNDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKSSFPRLDFHGFYTVILEKDDVLLCVASIRVHGSEVAEMPLIATCSKYRRQGMCRRLLNAIEEMLLSFKVKKLVIAAIPSLVETWTEGFGFVPVENDEKQSLHRFNLMVFPGTILLKKALYLSGPNTETTEGIHSGVQLDTDTKRQCNSNEACPRMEIKCSKYQELQEHNHEKMMDDHEGNPALPIDSSTLQVVESNGMDTSSGQKSVESVPQPDGNCCTDIVGATTETRTHEGKESLEVEVGAKRDIQLSEGKSWDEGVHAATMTRFVEPVVLT 1471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33318226 33332372 - CrPI670011_11g021650.1 Cre11g2165 513910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2165 1471 PANTHER PHD FINGER PROTEIN 12 708 1428 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Cre11g2165 1471 CDD NAT_SF 1211 1271 - -
Cre11g2165 1471 MobiDBLite consensus disorder prediction 253 274 - -
Cre11g2165 1471 Pfam PHD-finger 1020 1059 IPR019787 -
Cre11g2165 1471 Gene3D - 1190 1304 - -
Cre11g2165 1471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1010 1061 IPR013083 -
Cre11g2165 1471 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1153 1317 IPR000182 GO:0016747(InterPro)
Cre11g2165 1471 FunFam Increased DNA methylation 1 1010 1062 - -
Cre11g2165 1471 Pfam Tify domain binding domain 942 992 IPR032308 -
Cre11g2165 1471 MobiDBLite consensus disorder prediction 258 274 - -
Cre11g2165 1471 ProSiteProfiles Zinc finger PHD-type profile. 1017 1062 IPR019787 -
Cre11g2165 1471 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1206 1291 IPR016181 -
Cre11g2165 1471 MobiDBLite consensus disorder prediction 1393 1414 - -
Cre11g2165 1471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1062 1119 IPR013083 -
Cre11g2165 1471 SUPERFAMILY FYVE/PHD zinc finger 997 1061 IPR011011 -
Cre11g2165 1471 SMART PHD_3 1019 1060 IPR001965 -
Cre11g2165 1471 SMART PHD_3 1061 1115 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2165 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2242 Cre-Chr5:34042895 Cre11g2165 Cre-Chr11:33318226 7.50E-78 dispersed
Cre06g1369 Cre-Chr6:7888291 Cre11g2165 Cre-Chr11:33318226 1.70E-109 dispersed
Cre11g2165 Cre-Chr11:33318226 Cre09g0673 Cre-Chr9:6407840 5.10E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54735 PF16135 TDBD 2.60E-16 No_clan Cre TR