Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2172 ATGGGAAACTTTCCCTTTCTGTTTTCTTTCTTGTTGTTTGCTCTGATAGTTTCTGGGAAGCATGAAACTAACAGAACTATGAGCTCAAAAGTGGTTGATGGTGGAAGAGGCAGAATAGGGGCCATTGTAGACAAAAGTTCCAGGATTGGTAAGGAAGAGAGTTTAGCTATGCTGATGGCTGTAGAGGATTTTAACAACATCAACGATCGAAATTTCAGTTTTTTCATCAAAGACTCCAAAAGTGATCCTAATCAGGCAGCTCTTGCAGCTGAAGATCTGATCAGCATGGAACAAGTTCGGGTTCTTATAGGGCCACAAACCTGGGAAGAAGTTTCTGTAGTTGCCAAGGTCGGAAATGAGAATCAGATTCCAGTTCTAGCGTTGGCTAATGACATGCCAAAGTGGGCAACTGAGAGATTGAAATTCTTGGTCCAAGCTTCTCCCTCCCAGTTTAATCAAATGAGGGCCATAGCTGCTATTATTGGTTCGTGGGATTGGCGTCTGGTTAATGTTATATATGAAGACGGAGATTTCTCGACCACCGACATATTTCCTTACCTTGAGCATGCTCTCAAAGATGTAGGAGCTGAAATAAGTGAATTTGTGAGTCTCCCTCACTTTGATTCTAATTTATTGTCCAATGAACTAGAGAGGCTAAGAAGAGGGCCAAGTAGAGTTTTTGTAGTTCATATGTCGTTCAAGTTTGGATTCCATCTATTTCAAACTGCAAAAGAGATGGGAATGATGGAAAAAGACTATGTTTGGATCACTACTGATTCTTTCACAAGCCTTGCACATTCTTTTGATGTTTCTGTCAACTCTTTACTTCAAGGAGTTATTGGAATCAAGAGTTACTTCCCGGAAAGCAATCCTCCGTATCATAATTTTTACCATCAGTTCCGCAGTAGGTTTAGATTAGAGCATTTTGATGAGTACAACCACGAGCCTAGTATTTTTGCGGTACAGGCTTATGATGCTGTGAGAACAGCAGCTATGGCAATGAGTAGAACCCAAGGAAAAGGTGATCACTTGTTGGAATTCATCAAGCTCACTGATTTTCAAGGGTTGGGTGGAAAGATTCAGTTTAAAGACAGAAAATTAGCCCCAGCCAATACTTTTCAAATCATCAATGTCATGGGGAGGAGTTATAGGGACCTAGGCTTCTGGTCTGACGAATTAGGCTTCTCACAAGAGTTGGGGAAAAATTCGTCTACTAGCTTGTCGATGAAGGATCTTGGCCAAGTGTTTTGGCCAGGTGGATATACGGAAACTCCCAGGGGATGGGCTATACCAACAGATGCCAGGCCGTTGAGAATTGGTGTGCCAACTAGTCCCATGTTCAAGCAGTATGTAAATGTGGAAGGAGATCAGATAGGAAACAATTTATCTTTCAATGGACTTGCAATTGATCTGTTTAAAGCAACTATAGACAAGTTGTGCTTCCCTCTGCCGCACGAGTTCTACGCGTACAATGGAACGTATGATGATTTAGTGAAGCAAATCTATTTGAAGGAATTCGATGCAGCAGTAGGTGACATAGCAATAGTATCAACGCGTTACGAACATGCTGAATTTACACATCCTTACTCTGAAGCAGGACTTGTGATGATTGTTCCTACCATAAATAATAGAAGTAATAGAGCATTGTTGTTCACAAAGCCCTTTACTTTGACCATGTGGATCGTAATTTCTGTGGTAAATGTCTACAATGGCTTTGTTGTTTGGTTTATAGAACGAAATCACGGTCCTGAACCCGAAGGTTCGATGTTTAGTCAAGCTGGAACCATGCTCTGTTCATCCTTCACCACTCTCTTCTCCTTGCAGGGTAATAGGCTGCACAGTAACTTGTCGCGGATGACCATGGTTGTTTGGTTATTTGTGGCACTTGTGATAACTCAGATATACACAGCCAATCTTACCAGCATGCTGACTATTCAAAAGCTTGAACCGACTATATCGAACATCGAGACTCTCCAAAGAATGAATGCATTTGTGGGATGTGGCAGAGGATCCTTTGTCAAAGGATATTTGGAGACAGTTTTACACTTCCCCACAGAAACCATAAAAAACTACTCCACACCTGATGGTTTAGCGGATGCTCTCAGAAACCAAGAGATAGCAGCTACTTTTCTTGAAGTTCCTTTTGCAAAATTATTCCTTGCAAAATTTTGCAAAGAGTTCATGATTTCTGGGCCAACCTACAAAGTCGGAGGATTTGGATTTGCATTTCCAAGAGGCTCTCTGTTGTTACAATATGTGAACCAAGCATTGCTTAAAGTATCTGAAACAGGCAAGTACAGAGAGTTGGAGGACAGCATGCTTGCTAGTGAGAAATGTGAGGATGGGGAAGGGAAAGATAGAAGTCCAAGCCTCAGCCCCAACAGCTTCTTTTTACTATTTATATTGAGTGCAGGAGTGTCAACAATAGCACTCATATTCTATGTCTTTAATGCTACTCATAACTCTAATCTTCAACAAAACACTATTTGGAGATTAATGATAGCTGTAATGAGAAAATGGGGGAATCATAGAAGATTTTCTCGACGGGTACGTGAAGAGCCACATACCGTCCCAAATAATTTCCCATACACCACAAACATGCAAAGTCTAGCTTAG 2616 41.25 MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIKDSKSDPNQAALAAEDLISMEQVRVLIGPQTWEEVSVVAKVGNENQIPVLALANDMPKWATERLKFLVQASPSQFNQMRAIAAIIGSWDWRLVNVIYEDGDFSTTDIFPYLEHALKDVGAEISEFVSLPHFDSNLLSNELERLRRGPSRVFVVHMSFKFGFHLFQTAKEMGMMEKDYVWITTDSFTSLAHSFDVSVNSLLQGVIGIKSYFPESNPPYHNFYHQFRSRFRLEHFDEYNHEPSIFAVQAYDAVRTAAMAMSRTQGKGDHLLEFIKLTDFQGLGGKIQFKDRKLAPANTFQIINVMGRSYRDLGFWSDELGFSQELGKNSSTSLSMKDLGQVFWPGGYTETPRGWAIPTDARPLRIGVPTSPMFKQYVNVEGDQIGNNLSFNGLAIDLFKATIDKLCFPLPHEFYAYNGTYDDLVKQIYLKEFDAAVGDIAIVSTRYEHAEFTHPYSEAGLVMIVPTINNRSNRALLFTKPFTLTMWIVISVVNVYNGFVVWFIERNHGPEPEGSMFSQAGTMLCSSFTTLFSLQGNRLHSNLSRMTMVVWLFVALVITQIYTANLTSMLTIQKLEPTISNIETLQRMNAFVGCGRGSFVKGYLETVLHFPTETIKNYSTPDGLADALRNQEIAATFLEVPFAKLFLAKFCKEFMISGPTYKVGGFGFAFPRGSLLLQYVNQALLKVSETGKYRELEDSMLASEKCEDGEGKDRSPSLSPNSFFLLFILSAGVSTIALIFYVFNATHNSNLQQNTIWRLMIAVMRKWGNHRRFSRRVREEPHTVPNNFPYTTNMQSLA 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33427879 33431077 + CrPI670011_11g021720.1 Cre11g2172 513917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2172 871 Gene3D - 36 155 - -
Cre11g2172 871 FunFam Glutamate receptor 153 314 - -
Cre11g2172 871 Pfam Bacterial extracellular solute-binding proteins, family 3 461 556 IPR001638 -
Cre11g2172 871 PIRSF IGluLR_plant 1 862 IPR017103 -
Cre11g2172 871 Pfam Receptor family ligand binding region 54 378 IPR001828 -
Cre11g2172 871 Gene3D - 549 680 - -
Cre11g2172 871 Gene3D - 343 435 - -
Cre11g2172 871 Pfam Ligand-gated ion channel 772 804 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre11g2172 871 FunFam Glutamate receptor 548 686 - -
Cre11g2172 871 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 824 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cre11g2172 871 CDD PBP1_GABAb_receptor_plant 38 399 IPR044440 -
Cre11g2172 871 Gene3D - 156 308 - -
Cre11g2172 871 CDD GluR_Plant 435 774 - -
Cre11g2172 871 SMART GluR_14 438 776 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre11g2172 871 SUPERFAMILY Periplasmic binding protein-like I 38 429 IPR028082 -
Cre11g2172 871 Gene3D - 681 778 - -
Cre11g2172 871 SUPERFAMILY Periplasmic binding protein-like II 414 771 - -
Cre11g2172 871 Gene3D - 436 548 - -
Cre11g2172 871 FunFam Glutamate receptor 432 548 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2172 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g2172 Cre-Chr11:33427879 Cre11g2173 Cre-Chr11:33436864 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68