Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2173 ATGGGAAAGTTTCCCTTTCTGTTTCCTTTCTTGTTGTTTGCTCTGATAGTTTCTGGAAAGCATGAAACCGAAAGAAATGTGAGTGCAACAATGGTTGATGATGGAAAGGGCAGAATAGGGGCCATTGTAGATCTGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAACAATCAAAATTTCAGTCTTATCATTAAAGATTCCAGAAGTGATCCCAATCTTGCAGCTAAAGAGCTCATCAGTGTACAACAAGTTCATGCTTTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGCTTCTCCTTCCCAGTTAAATCAAATGAAGGCTATAGCTGGTATTATCAGTTCATGGGATTGGCATCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACAGGAATATTTCCTGATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAGTTAGTGAATTTGTTGGTCTCTCACAGTTTGATTCTGATTTATTTTCTAAAGAACTGGAAAAGCTAAGAAGAGGGTCATGCAGAATTTTTGTAGTGCATATGTCTTTCAAGTTGGCACTGCATCTATTTGAGATAGCAAACAAGATGGGAATGATGGGAAAGGACTATGTATGGATCACCACTGATACTTTCACAAGCCTTGCACATTCTTTCAATGTTTCTATCAACTCTATGCTACAAGGAGTTGTTGGAGTCAAGAGCTACTTCCCAGAAAGAAATCCTCCATATCATGAATTTTATCATCGGTTTTCTCAAAGGTTTAGATTAGAGTATTTTGATGAGGACAACAACGAGCCTGGTATTTTTGCAGTACAGGCTTATGATGCTGCAATGACAGCGGCTATGGCTATGAGTGAAATCCAAGAAAAGGGTAATCACTTGTTAGAAAAAATAAAGCTCACTCACTTTCAAGGACTCAGTGGAAAGATTCAGTTTAAGGACAGAAAATTAGCCCCAGCTGATACTTTTCAGATTATCAATGTGGTGGGGAGAAGTTATAGGGAACATAGCTTCTGGTCTGATAAATCAGGCTTCTCAAGAGAGCTGAGGGAAAATTCATCTTCTAGCTTGTCGATGAAGAATCTTGGTGAAATGTTTTGGCCAGGTGGATCTTCAAAAACACCAAGGGGATGGGTCATACCAATGGATGCCAATTCATTGAGAATTGGGGTGCCAGTTAGTTCCATGTTCAAACAGTATGTACATATGGGAAAAAATTTATTCTTCAATGGACTTGCAATTGATCTGTTTGAAGCAACTTTAGACTACCTTCCTTTTGCTCTACCACGTGTCTTCTGTCCTTTCAATGGAACTTATGATGATTTAGTGCAAGGAATCTACTTGAAGAAATATGATGCAGCAATAGGTGACATAGCAATAACAACAAAACGCTTAGACCATGCAGAATTTACACATCCTTACTCTGAAGCAGGATTGGTGATGATAGTTCCTACCAGAAAAGACACAAGTAACAAAGCATTGTTGTTCACAAAGCCCTTTACTGTGACCATGTGGATTCTAATTGCTGTGGTAACTGCCTACAATGGCTTCGTCATGTGGTTCATAGAACGAAATCACTGTCCTGAACATGAAGGTTCAATGTTTGATCAAGCTGGAGCTATGCTTTGCTCATCCTTCACCACTCTCTTCTCCTTGCACGCTAATCTTGCTAGCATGCTCACTATTCAAAAGTTTGAAGCGACGATATCGAATATTGAGACTCTCCATAGAAAAAATGCATCTGTGGGAAACGGAAGAGGAACCTTTGTCCAAAGATATTTGGAAGAAGTTTTAGACTTTCCAGCCAAAAATATAAAAGGCTACAGTACCCCAAACGATCTAGTCAACGCTCTCAGAAACCAGGAGATAGCAGCTGCATTTCTTGAAGTCCCTTTTGCAAAATTATTCCTTGCAAGATTTTGCAAGGAATTCGTGATTTCTGGACCAACCTACCTTGTTGGAGGATTTGGATTTGCATTTCCGACTGGCTCTCCGCTGTTACGAGATTTTAACAAAGCACTGCTTAAGGTATCTGAAACTGGGAAGTACAGAAAGTTGGAGGAAAGCATGATTGCTAGTGAGAAATGTGAGGATAGTAATGCAAAAGATGAAAGTTCAAGCCTTAGCCCCAACAGCTTCTTTTTACTATTTTTATTGAGTGGAGGAGTATCAACAATGGCATTAACATTGTACATTATCAATGCTCATAAATCTTGTCTTCAACATAATGCTATTTGGAGATTAATGTTAGCTGTAATTAAGGGCTGGAGAGATCACAGCAAGGGATTTTCTCGACGAGTAAGCGATGAGCCACAGACCGTCCCAAAGAACTTCCCAAAGGCTACAAACTTGCAAATCCAGTCAATCGTTTATTCATTCTTTATTCACTCTTTTTCTGGAGAGCATGAAACTGAAGGAAACACAAACTCGACGATGAATGATAGTGGAAAGGGCAGAATAGGGCTCATTGTAGACAAGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCAGATGGCTATAGAAGATTTTAACTCCTTCAGCAATCAAAGTTTTAGTCTTGTCATCAGAGACTACAAAAGTGATCCAAATCTTGCAGCTCTTGAAGCTAATGATCTCATCAGTATGCAACAAGTTCAGGTTCTTATAGGACCACAAACTTGGGAAGCTGCATCCATAGTTGCTGAGGTTGGAAATGAGAAACAGGTTCCAGTTCTAACGTTAGCTAATGAAATACCAAAATGGGCGACCGAGAGGTTCAAATTTTTGGTTCAAGCTTCTCCCTCCCAACTACATCAAATGAGGGCTATAGCTGGTATTATCAGTTCGTGGGATTGGCACCTTGTCAATGTAATATATGAAGATAGAGATTTCTCAACCACCGGAATATTTCCTCATCTTGTACATGCCCTCCAAGACGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCTCAATTTGATTTTGATTTATTTTCCAAAGAATTGGAGAGGCTAAGAAGAGGGTCAAGCAGAATATTTGTAGTTCATATGTCTTTCAAGTTGTCACTGTGTCTATTTGAGATAGCAAAAGAGATGGGAATGATGAAAAACGACTATGTTTGGATCACTACTGATTCTTTCACAAACCTTGCACATTCTTTGAATGCTTCTATCAACTCTCTACTACAAGGAGTTGTTGGAGTCAAGAGCTTCTTCCCTGAAGACAATCCTCAATTTCATGAATTTTATCTTCGGTTTTGTCAAAGGTTTAGATTAGAGCATTCTGACGAGGACAATCACGAGCCTGGTATTTTTGCGATACAGGCTTATGATGCTGCAAGAACAGCAGCTATGGCAATGAGTGAAATCCAAGAAAAGGGGAATCACTTGTTGGAAAAAATAAAGCTCACTGATTTTCAAGGACTCAGTGGAAAGATTCAGTTTAAGGACAGAAAACTGGCCCTATCTGATACTTTTCAGATCATTAATGTTATGGGGAGGAGTTATAGGGATTTAGGCTTCTGGTCGGATAAGTTAGGCTTCTCACGAGAGTTGAGGGAAAATTCGTCTTCTAGCTCGTCGATGAAGGATCTTGGCGAAGTGTTTTGGCCCGGTGGATCTTTGATAACTCCAAGGGGATGGGTTGTACCAACAGATGCCAATTCATTGAGAATTGGGGTGCCTACTAGTTCCATGTTCAGACAGTATGTACATGTGGAAGAAGATCCTTTGGGAAATAATTTATCCTTCAATGGACTTGCAATTGATCTGTTCAAAGCAACTTTAGACAACCTTAACTTCCCTCTGTCCTACCACTTTTTTCGTTTCGATGGACCATATGATGATTTGGTGAAGCAAATCTACCTGAAGAACTTCGATGCAGCCGTAGGTGATATAGCAATATTATCACGGCGCTATGAACATGCGGAGTTTACGCATCCTTACTCAGAAGCAGGACTGGTGATGGTAGTTCCTACCATAAAAGATTCAAGTAATAGAGCATTGATGTTCACAAAGCCCTTTACAGTGACCATGTGGTTTGCAATTGCTGTGATAAATGTCTACAATGGCTTTGTAGTCTGGTTCATAGAACGCAATCGCTATCCCGGTCATGAAGGTTCGATGTTTAATCAAGCCGGAACCATGCTTTGCTCATCCTTCACCACTCTCTTCTCCTTACATGGTAATATGCTGCACAATAACTTGTCTAGGATGACCATGGTGGTTTGGCTATTTATGGCACTTGTGATAACTCAAATATATACTGCTAATCTTACAAGCATGCTCACTACTCAAAAGCTCGAACCGACGATAACGAATATCGAAACTCTCCAAAGGGCAAATGCGTTAGTCGGATTTGGCAGAGGATCATTTGTCAAAAGATATTTGGAAGAAGTCTTACACTTTCGTGCCGAAAACATAAGAAACTACTCTACACCTGATGATTATGCCGAAGCTCTCAGAAAGCGAGAGATAGCAGCTGCTTTTCTTGAAGTCCCTTTTGTAAAAATATTCCTTGCAAGATTTTGTAGGGAATTCATGGTATCTGGACCAACCTACAAAGTTGGAGGATTTGGATTTGCATTTCCGAGAGGCTCTCCGCTGTTAACGGATATTAACGAAGCATTGCTCAAGGTATCTGAAACTGGGAAGTTCAGAGATTTGGAAGATAGCATGATTGCTAATGAGAAATGTGAGGATGGGGATGCAAAGGATGAAAATTCAAGCCTCAGCCCCAACAGCTTCTTCATATTATTTGTATTGAGTGGAGGAGTATCAACCATAGCTCTTACATTATACATCTTTAATGCTCATAACTTCAGTTTTCAACAGAATACCATTTGGAGATTAATGATAGCTGTAATGAGACATTGGGGAAAGCACAGGAGGCAATTTTCTCGACGAGTAAGTGATGAACCGCAAATGACTGTCTCAAATAACTTCTCGAACGCCACGAACTTGCAAATTCAGGTCTAG 5016 40.01 MGKFPFLFPFLLFALIVSGKHETERNVSATMVDDGKGRIGAIVDLSSRIGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPNLAAKELISVQQVHALIGPQTWEMASVVAEASPSQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAEVSEFVGLSQFDSDLFSKELEKLRRGSCRIFVVHMSFKLALHLFEIANKMGMMGKDYVWITTDTFTSLAHSFNVSINSMLQGVVGVKSYFPERNPPYHEFYHRFSQRFRLEYFDEDNNEPGIFAVQAYDAAMTAAMAMSEIQEKGNHLLEKIKLTHFQGLSGKIQFKDRKLAPADTFQIINVVGRSYREHSFWSDKSGFSRELRENSSSSLSMKNLGEMFWPGGSSKTPRGWVIPMDANSLRIGVPVSSMFKQYVHMGKNLFFNGLAIDLFEATLDYLPFALPRVFCPFNGTYDDLVQGIYLKKYDAAIGDIAITTKRLDHAEFTHPYSEAGLVMIVPTRKDTSNKALLFTKPFTVTMWILIAVVTAYNGFVMWFIERNHCPEHEGSMFDQAGAMLCSSFTTLFSLHANLASMLTIQKFEATISNIETLHRKNASVGNGRGTFVQRYLEEVLDFPAKNIKGYSTPNDLVNALRNQEIAAAFLEVPFAKLFLARFCKEFVISGPTYLVGGFGFAFPTGSPLLRDFNKALLKVSETGKYRKLEESMIASEKCEDSNAKDESSSLSPNSFFLLFLLSGGVSTMALTLYIINAHKSCLQHNAIWRLMLAVIKGWRDHSKGFSRRVSDEPQTVPKNFPKATNLQIQSIVYSFFIHSFSGEHETEGNTNSTMNDSGKGRIGLIVDKSSRIGKEEILAMQMAIEDFNSFSNQSFSLVIRDYKSDPNLAALEANDLISMQQVQVLIGPQTWEAASIVAEVGNEKQVPVLTLANEIPKWATERFKFLVQASPSQLHQMRAIAGIISSWDWHLVNVIYEDRDFSTTGIFPHLVHALQDVGAEVSEFVGLSQFDFDLFSKELERLRRGSSRIFVVHMSFKLSLCLFEIAKEMGMMKNDYVWITTDSFTNLAHSLNASINSLLQGVVGVKSFFPEDNPQFHEFYLRFCQRFRLEHSDEDNHEPGIFAIQAYDAARTAAMAMSEIQEKGNHLLEKIKLTDFQGLSGKIQFKDRKLALSDTFQIINVMGRSYRDLGFWSDKLGFSRELRENSSSSSSMKDLGEVFWPGGSLITPRGWVVPTDANSLRIGVPTSSMFRQYVHVEEDPLGNNLSFNGLAIDLFKATLDNLNFPLSYHFFRFDGPYDDLVKQIYLKNFDAAVGDIAILSRRYEHAEFTHPYSEAGLVMVVPTIKDSSNRALMFTKPFTVTMWFAIAVINVYNGFVVWFIERNRYPGHEGSMFNQAGTMLCSSFTTLFSLHGNMLHNNLSRMTMVVWLFMALVITQIYTANLTSMLTTQKLEPTITNIETLQRANALVGFGRGSFVKRYLEEVLHFRAENIRNYSTPDDYAEALRKREIAAAFLEVPFVKIFLARFCREFMVSGPTYKVGGFGFAFPRGSPLLTDINEALLKVSETGKFRDLEDSMIANEKCEDGDAKDENSSLSPNSFFILFVLSGGVSTIALTLYIFNAHNFSFQQNTIWRLMIAVMRHWGKHRRQFSRRVSDEPQMTVSNNFSNATNLQIQV 1671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33436864 33453103 + CrPI670011_11g021730.1 Cre11g2173 513918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2173 1671 SUPERFAMILY Periplasmic binding protein-like II 1214 1570 - -
Cre11g2173 1671 Pfam Ligand-gated ion channel 1571 1603 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre11g2173 1671 SUPERFAMILY Periplasmic binding protein-like I 837 1228 IPR028082 -
Cre11g2173 1671 CDD PBP1_GABAb_receptor_plant 38 367 IPR044440 -
Cre11g2173 1671 Gene3D - 835 953 - -
Cre11g2173 1671 Gene3D - 1129 1234 - -
Cre11g2173 1671 Gene3D - 286 403 - -
Cre11g2173 1671 Gene3D - 1348 1489 - -
Cre11g2173 1671 Pfam Bacterial extracellular solute-binding proteins, family 3 1261 1355 IPR001638 -
Cre11g2173 1671 Pfam Bacterial extracellular solute-binding proteins, family 3 417 706 IPR001638 -
Cre11g2173 1671 Gene3D - 28 121 - -
Cre11g2173 1671 SMART GluR_14 406 711 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre11g2173 1671 SMART GluR_14 1237 1575 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre11g2173 1671 Gene3D - 404 521 - -
Cre11g2173 1671 SUPERFAMILY Periplasmic binding protein-like I 38 398 IPR028082 -
Cre11g2173 1671 Pfam Receptor family ligand binding region 854 1177 IPR001828 -
Cre11g2173 1671 Pfam Receptor family ligand binding region 114 348 IPR001828 -
Cre11g2173 1671 Gene3D - 1523 1580 - -
Cre11g2173 1671 FunFam Glutamate receptor 952 1113 - -
Cre11g2173 1671 Gene3D - 1235 1347 - -
Cre11g2173 1671 Gene3D - 605 712 - -
Cre11g2173 1671 CDD PBP1_GABAb_receptor_plant 837 1198 IPR044440 -
Cre11g2173 1671 SUPERFAMILY Periplasmic binding protein-like II 383 706 - -
Cre11g2173 1671 FunFam Glutamate receptor 121 282 - -
Cre11g2173 1671 CDD GluR_Plant 1236 1573 - -
Cre11g2173 1671 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 838 1622 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cre11g2173 1671 Gene3D - 954 1113 - -
Cre11g2173 1671 Gene3D - 122 280 - -
Cre11g2173 1671 CDD GluR_Plant 405 709 - -
Cre11g2173 1671 FunFam Glutamate receptor 1347 1485 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2173 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1542 Cre-Chr8:28039015 Cre11g2173 Cre-Chr11:33436864 5.70E-221 dispersed
Cre08g1543 Cre-Chr8:28065490 Cre11g2173 Cre-Chr11:33436864 5.60E-143 dispersed
Cre11g2173 Cre-Chr11:33436864 Cre11g2281 Cre-Chr11:34516349 1.20E-103 dispersed
Cre11g2172 Cre-Chr11:33427879 Cre11g2173 Cre-Chr11:33436864 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68