Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2177 ATGGCATCCGCTTCCGATTCCCGTTCAAGCGGCGTTTCCGGTAGAATCAAATCCGCCGCCACTATTATGCACTCCGAGAATCAATCCCTCCTTGCCGAATTGCGGAAGGCGCTGATTATGATGAAGGAAATTGGGGTGGATTTGGAGAGGGATAATCAATCCAGGATGGTCAAGGAGCTTGAAAATTCTGTTGTCGAGCTGTTGAGTACTTATGAAGACTGTAACAACTTTTCATCTGCAATTCAGTCGGTTGGAAATATGTATGAACCAAAAGAAGAGTTAACAGATTTTGGGAAACTACTTGACGATGAAGTTGCAAAACTCAGTGAAAATTCATCTTCAAATTTGCTGAACCATTCAATAATTCGGCAATTTAGAGAAGCTATTTGGAATGTTCATCATTCAGGACAACCAATGCCAGGTGAGGAGCAGGAGGACATTGTGATGACCAGTACTCAGTGTAATCTATTGAATATCACTTGCCCGTTAAGTGGAAAGCCTGTCACCGAATTAGCAGAACCCATTCGCAGTATGGAATGCAAGCACATATATGAAAAGGTAGCCATAATGCAGTATCTTAAATCCAAGAAATCTCGCGCGCAATGCCCGGTTGCAGCCTGTCCTAAGATGTTGCAGCCCGAAAAGGTTGTAGCTGATCCGTTCTTACAGATTGAAATTGATGAACTGCGAAAAATAATTCGACCGCTCCAAAGTCCGTCGTCTTCCCGGCTCCGGTCGACCGTCGGAGTGTACACTGAACATCATCCACTCACTTCCGTTCATTTCAGTTCAATGTTTCTGAGAGCTCCGCTGCTTAAGCTTTCATCATTCTACTCAATCCCATGTCATCCTCTGGTTCCGTTGTCTCTCTCTTCCTCAATTTGTTCTTCTTCTCGCACACCTTTCGCCATCCGATGCCATTCATCTCTCCCCACAGCCCACGAACCATCTTCTTCAGCTCCTTCTGAATACCCCGATGTGGTGGATAATCGTTGGCGGCCCACGTGTTTGTATTTCACACAGGGCAAGTGCACAATGATGGATGATCCACTCCACATAAAGAAGTTCAATCATGATATCTCCAGGGAGCTTCAGGTAGAAATTGCTAGGTCAAACCATATGCGAACTCAGGACATTGATTTTTTTCTGGTGCTTGATTTGGAGGGTAAAGTTGAAATTATTGAGTTTCCAGTCATATTAGTCAATGCCAAGACAATGGGTGTGACAGGTTTTTTCCACAGGTTTGTTAGGCCATCAAGAATGAGTGAACAAAGGATAAATGAATACATTGAAGGAAAATACAGCAAGTTTGGAGTTGACCGTGTCTGGCATGACACAGCCATACTGTACAAGGATGTTATTCAACAGTTCGAAGATTGGCTTGTTCATCATCAGCTATGGAGGAAGGAACTGGGTGGTGTTCTTGATCGAGCAGCATTTGTGACATGTGGCAACTGGGATATAAAAACTCAGGTCCCACATCAATGTAGCGTGTCGAAGATGAAACTTCCTGACTATTTTATGGAGTGGATCAACATTAAAGATGTCTATCTCAACTTTTACCAAAAGAAGGCAACGGGAATGGTGACGATGATGAGACAACTCGAAATACCCTTGGTGGGAAGCCATCATCTTGGTATAGATGATACAAAGAACATCGTGAGAGTGTTGCAGAGAATGGTTGTTGATGGTGCACATTTGCAGATCACTGCACGTAGGAATCCCAAATCTCCTCAACATGTTAAGTTTCTTTTTGAGAACCTTTGTGACAAATGGAAGTTGAATACAAATGCTTCTTGGTGCCCCTCTTGCCAAGTTGAAGGGCTGGGATGGGTGATATGTGACCATCTTGGATGTGTTCTTCAAGCAGGGCCACCGGGCGAAGACGGCGGAAGTGGACGGCTATTAGTAAAGCTGAAACCCCATGGTTCAAACCATTCAAGGTCCTCTACTGTTCCGAAATCCGAAGCTTCATCAAAAACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATCATTCCCAGAAGAATATTCTCATTCCGGTGAATGATGATTTTAGTGTTACAGATGAAGTAGCCATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGCCCTATAGAGCGCGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCTAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAGAAGGAAGGAAGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTGGCGTTGAGATCCAAAACGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAAAAGAAACGCAGGCCAAGGAAGAAATCCAAGGATGGAAGTGGTTTTGAATGA 2640 43.98 MASASDSRSSGVSGRIKSAATIMHSENQSLLAELRKALIMMKEIGVDLERDNQSRMVKELENSVVELLSTYEDCNNFSSAIQSVGNMYEPKEELTDFGKLLDDEVAKLSENSSSNLLNHSIIRQFREAIWNVHHSGQPMPGEEQEDIVMTSTQCNLLNITCPLSGKPVTELAEPIRSMECKHIYEKVAIMQYLKSKKSRAQCPVAACPKMLQPEKVVADPFLQIEIDELRKIIRPLQSPSSSRLRSTVGVYTEHHPLTSVHFSSMFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSAPSEYPDVVDNRWRPTCLYFTQGKCTMMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYSKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVVDGAHLQITARRNPKSPQHVKFLFENLCDKWKLNTNASWCPSCQVEGLGWVICDHLGCVLQAGPPGEDGGSGRLLVKLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33475870 33488054 - CrPI670011_11g021770.1 Cre11g2177 513922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2177 879 PANTHER 3'-5' EXONUCLEASE ERI1-RELATED 317 587 IPR051274 GO:0000175(PANTHER)|GO:0000467(PANTHER)
Cre11g2177 879 MobiDBLite consensus disorder prediction 640 677 - -
Cre11g2177 879 MobiDBLite consensus disorder prediction 860 879 - -
Cre11g2177 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 238 IPR013083 -
Cre11g2177 879 ProSiteProfiles Zinc finger SP-RING-type profile. 143 231 IPR004181 GO:0008270(InterPro)
Cre11g2177 879 FunFam Interferon-stimulated exonuclease gene 20 690 861 - -
Cre11g2177 879 SUPERFAMILY RING/U-box 159 230 - -
Cre11g2177 879 Pfam Exonuclease 385 557 IPR013520 -
Cre11g2177 879 Pfam Exonuclease 695 841 IPR013520 -
Cre11g2177 879 MobiDBLite consensus disorder prediction 660 675 - -
Cre11g2177 879 SMART exoiiiendus 693 851 IPR013520 -
Cre11g2177 879 Gene3D - 369 593 IPR036397 GO:0003676(InterPro)
Cre11g2177 879 SUPERFAMILY Ribonuclease H-like 695 849 IPR012337 -
Cre11g2177 879 SUPERFAMILY Ribonuclease H-like 378 561 IPR012337 -
Cre11g2177 879 CDD REX4_like 695 843 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Cre11g2177 879 CDD ERI-1_3'hExo_like 382 560 IPR047201 GO:0000175(InterPro)
Cre11g2177 879 Pfam Zinc-finger of the MIZ type in Nse subunit 145 207 IPR004181 GO:0008270(InterPro)
Cre11g2177 879 CDD SPL-RING_NSE2 159 228 IPR004181 GO:0008270(InterPro)
Cre11g2177 879 MobiDBLite consensus disorder prediction 643 658 - -
Cre11g2177 879 Gene3D - 691 869 IPR036397 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2177 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g171 . . . . . . . . . . . Cma09g00836 . Car09g00751 Sed05g2541 Cpe06g00667 . Bhi09g03472 Tan01g4356 Cmetu07g0939 . Hepe01g1415 Mch11g1036 . Cla11g01731 Cam11g1800 Cec11g1821 Cco11g1827 Clacu11g1959 Cmu11g1769 Cre11g2177 . . Cone14ag1048 . Lsi04g02040 Csa04g02310 Chy07g00046 Cme07g00564 . . . . . . . . . . Cmo09g00831 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011810 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 26