Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2185 ATGGCTGCCGGAGACCGGTCGACATCCACCGCCTCAACCGCCGCACCGCCTCATTCTAAAGAGATCCGCTACAGGGGCGTCAGAAAGAGGCCGTGGGGCCGCTACGCCGCGGAAATCCGGGACCCACGTAAGAAGACTAGGGTTTGGCTTGGCACATTCAACACCGCGGAAGAGGCGGCGCGTGCTTATGACACGGCCGCGCGTGAATTTAGAGGCGTTAATGCCAAAACTAACTTCCCCGTCCAGAACGAATTCCTAATCGTCGACAACAATAACAACAACTTCCGTAAATCCGCTGGCAGCAGTAGTCCCAGCCAGTGCAGCACCGTCGAATCCTCTTCCCCGTCGCCAGCGCCGTCGGATCCTTCCCTCACTCACTTCCTCGACGGCGGCGTCCACGTGCCGGCCACTAACCGCCCAATTTTCTTCTTCGACGCGTTCGCTCAGGCAGAGAAGATCAGTGACTATCGTCGGACCGTTACCGTCGCCGTCGCCGGTGCTGGCGAATCCGTGAGCGACTCCGATTCGTCATCCATAGTTGATTTCGACAGTACGCGGAAATCTCGGCCGTTGGATTTTGACCTGAATCTTCCGGCTGTGGAAGTTGTTTGA 612 57.84 MAAGDRSTSTASTAAPPHSKEIRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFNTAEEAARAYDTAAREFRGVNAKTNFPVQNEFLIVDNNNNNFRKSAGSSSPSQCSTVESSSPSPAPSDPSLTHFLDGGVHVPATNRPIFFFDAFAQAEKISDYRRTVTVAVAGAGESVSDSDSSSIVDFDSTRKSRPLDFDLNLPAVEVV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33557710 33558321 + CrPI670011_11g021850.1 Cre11g2185 513930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2185 203 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677(InterPro)
Cre11g2185 203 CDD AP2 23 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g2185 203 SMART rav1_2 23 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g2185 203 MobiDBLite consensus disorder prediction 1 16 - -
Cre11g2185 203 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g2185 203 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g2185 203 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g2185 203 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 160 - -
Cre11g2185 203 MobiDBLite consensus disorder prediction 96 121 - -
Cre11g2185 203 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g2185 203 MobiDBLite consensus disorder prediction 1 20 - -
Cre11g2185 203 MobiDBLite consensus disorder prediction 96 124 - -
Cre11g2185 203 Pfam AP2 domain 23 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g2185 203 FunFam Ethylene-responsive transcription factor 2 23 82 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2185 K09286 - - csv:101213540 270.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1705 Cre-Chr8:29401155 Cre11g2185 Cre-Chr11:33557710 1.60E-20 dispersed
Cre09g1741 Cre-Chr9:35740943 Cre11g2185 Cre-Chr11:33557710 6.80E-18 dispersed
Cre10g0724 Cre-Chr10:7001235 Cre11g2185 Cre-Chr11:33557710 1.50E-22 dispersed
Cre10g1272 Cre-Chr10:25826004 Cre11g2185 Cre-Chr11:33557710 3.20E-19 dispersed
Cre11g2185 Cre-Chr11:33557710 Cre08g0095 Cre-Chr8:1990090 3.30E-16 dispersed
Cre11g2185 Cre-Chr11:33557710 Cre04g1931 Cre-Chr4:36856481 2.60E-29 wgd
Cre11g2185 Cre-Chr11:33557710 Cre07g0612 Cre-Chr7:3927848 3.40E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g184 . . . Bda09g00524 . Bpe02g01898 . . . . Cma01g01222 Cma09g00846 Car01g01044 Car09g00759 Sed04g2417 . . Bhi09g03458 Tan01g4370 Cmetu07g1192 . Hepe01g1405 Mch11g1046 . Cla11g01739 Cam11g1809 Cec11g1829 Cco11g1835 Clacu11g1969 Cmu11g1779 Cre11g2185 Cone6ag0166 Cone9ag0191 . . Lsi04g02049 Csa04g02321 Chy07g00055 Cme07g00574 . . . . . Bpe01g00438 . . . Cmo01g01275 Cmo09g00840 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006814 3 1 2 1 2 0 2 1 0 1 1 1 2 1 1 2 0 2 0 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54739 PF00847 AP2 5.70E-14 CL0081 Cre TF