Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2186 ATGCGCGTGGCGTGGAACCCGTCTCACACGGCTGTTTCCTTGGCGGTGCAGGATCCGGAAATGAAGGCCAATCATTTGAGTACACGGGCAAAAGGCGGTTTCCATTTCTCAATTCAAGCGTACTTCAACTGTGGTGGAATCCTTTACCCGTTGAAGCTGAGGCGGAAGACGGGAGCTAAGAGCGTGAAAGCGATGGGACGGATTTTTGTTGTGGAAAGGGAAGGGAGGTCCTATAGATGCAAGTACTGCAACACGCAGTTAGCTCTCTTCGACGACCTTGCGTCTCGGTCCTTTCATTGCCGCCGTGGAAAAGCCTACCTTTTCAATAATGCGATAAACATTTCTTATGGAGCGTTGGAAGAGAGGATGATGCTCTCAGGATTGCACACTGTAGCAGATATATTTTGTTGCACTTGTGGACAAATTGTCGGGTGGAAATATGAGGCAGCACATGAGAAGAGCCAAAAGTACAAGGAGGGGAAGTATGTTCTTGAAAGGGGGAGGATAGTCGATGACAATGAATTCTCGACAGGCTTCTTTATAGATTCTCGGTCTAGTATCAGTGATAGCGAAGATAATTAG 582 47.59 MRVAWNPSHTAVSLAVQDPEMKANHLSTRAKGGFHFSIQAYFNCGGILYPLKLRRKTGAKSVKAMGRIFVVEREGRSYRCKYCNTQLALFDDLASRSFHCRRGKAYLFNNAINISYGALEERMMLSGLHTVADIFCCTCGQIVGWKYEAAHEKSQKYKEGKYVLERGRIVDDNEFSTGFFIDSRSSISDSEDN 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33562292 33570973 + CrPI670011_11g021860.1 Cre11g2186 513931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2186 193 ProSiteProfiles Yippee domain profile. 76 173 IPR034751 -
Cre11g2186 193 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 65 170 IPR039058 -
Cre11g2186 193 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 78 169 IPR004910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2186 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0813 Cre-Chr4:26813314 Cre11g2186 Cre-Chr11:33562292 1.10E-38 dispersed
Cre05g0132 Cre-Chr5:1468014 Cre11g2186 Cre-Chr11:33562292 2.90E-24 dispersed
Cre07g0763 Cre-Chr7:5825404 Cre11g2186 Cre-Chr11:33562292 5.40E-41 dispersed
Cre09g2481 Cre-Chr9:44114337 Cre11g2186 Cre-Chr11:33562292 1.00E-26 dispersed
Cre11g1108 Cre-Chr11:8553363 Cre11g2186 Cre-Chr11:33562292 1.90E-25 dispersed
Cre11g2186 Cre-Chr11:33562292 Cre03g0919 Cre-Chr3:7915572 2.10E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g185 . . . . . . . . . . Cma01g01220 . Car01g01043 Car09g00760 Sed04g2416 Cpe06g00674 Cpe02g00692 Bhi09g03456 Tan01g4371 Cmetu07g1273 . Hepe01g1404 Mch11g1047 . Cla11g01741 . Cec11g1830 . Clacu11g1970 Cmu11g1780 Cre11g2186 . Cone9ag0190 . . Lsi04g02051 Csa04g02323 . Cme07g00575 . . . . . . . . . Cmo01g01274 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000236 2 9 4 4 3 3 7 3 3 4 6 3 6 4 5 7 2 5 7 4 5 4 5 3 5 3 5 13 16 4 154