Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2191 ATGCGAATCCTCCTATACATGTTGGACTTGACATTTATTCATAAAACGAGTACAAAGGAGGAAGAGATCTATGGTGTTATTGCTCAGAATAAATCAGTTCCTCCTAATGTTCTTTTGAATCGCATTCTTGGTGTTTCTCATTATGTTAGCCTGTCGCCATTGCGTATCTTAGTTCCTCCAACCCGTCATATGTCTTATGTTGACACCCACTTGCTTTACTTCGGGTTCAAGGGCTGCTGCGCATTATCTAATGTTTATATCAATTGTTCTTTTCATGAATTTGGATTCTGTTTCGTTGTCAAATCCATGGGTTTGGTTGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACTAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCGCCGCTTGATGAAATGTCAATTGCATGCATTTTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCAAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCCAGGCTTCAGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCAACAAATGGTCCTAGAGCTATAGGTGAAACGTCAGACACTGTGAAAGTATCAAGAAATGTAAGAGATGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCTAGCTGCGTCTGGAAATGCACCACGCGACATATCAGAGAACACTAGAGATTCATACAGTATGGGAGATGCTAGTGAAGATGAAGAGTTAAGTGGTTCAGGAACTGTTGTGATCCGGTCTCCCAGGGGATCTCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGGAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGACAACGTGATGATTCTGATTCTCCCCAGACTCCAAAATCCAGATTGGGAATTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGACAGTGCATCAAACCTTGCCGAGGCAAAAGCTGCAATTCAAGCAGGATTGAGAAAAGCTAATGCAAGAGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAACAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTTTTTGATGCGCCACGAGCATTGCTAAAACCATCTCTATCGATTGATGAGGAAGAAAGTGCAAAAATAGCATCGTCTTCTGCACCATTATCGGTTTTGTTTATGTCATCCTTGAAAGAGGTATTTGCAGATGATTCGGAAGGATTGCCTGCTCGTACTGTAATCAATGCACTTATCAATATGGAACACCAAAAACTTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAAGATTTACAAGACTTGGCAACTCGCTTATTCACTAAGGCAAAGACAGTTCCTGAAAATACACAAAATGTCACGGATTCTGATAGCAGCAAAAAGCAACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCAAGGGATCTGAGTCCAGCTTAA 2376 41.41 MRILLYMLDLTFIHKTSTKEEEIYGVIAQNKSVPPNVLLNRILGVSHYVSLSPLRILVPPTRHMSYVDTHLLYFGFKGCCALSNVYINCSFHEFGFCFVVKSMGLVEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLQERIRERPKYQIKEEDAETPTNGPRAIGETSDTVKVSRNVRDETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWLAASGNAPRDISENTRDSYSMGDASEDEELSGSGTVVIRSPRGSQASTQFHNESSPSGSAQAYFEDTSFSGTVVMRGQRDDSDSPQTPKSRLGIQERTSSLSPEDSASNLAEAKAAIQAGLRKANARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALLKPSLSIDEEESAKIASSSAPLSVLFMSSLKEVFADDSEGLPARTVINALINMEHQKLGSCEVLVTKLLQKLASSKESSLKDLQDLATRLFTKAKTVPENTQNVTDSDSSKKQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33593124 33608509 - CrPI670011_11g021910.1 Cre11g2191 513936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2191 791 SUPERFAMILY Protein kinase-like (PK-like) 111 397 IPR011009 -
Cre11g2191 791 Gene3D Transferase(Phosphotransferase) domain 1 110 400 - -
Cre11g2191 791 MobiDBLite consensus disorder prediction 379 540 - -
Cre11g2191 791 ProSiteProfiles Protein kinase domain profile. 113 365 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2191 791 MobiDBLite consensus disorder prediction 605 624 - -
Cre11g2191 791 Pfam Protein kinase domain 114 365 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2191 791 MobiDBLite consensus disorder prediction 553 586 - -
Cre11g2191 791 MobiDBLite consensus disorder prediction 515 540 - -
Cre11g2191 791 MobiDBLite consensus disorder prediction 742 767 - -
Cre11g2191 791 MobiDBLite consensus disorder prediction 599 636 - -
Cre11g2191 791 CDD STKc_MST3_like 112 385 - -
Cre11g2191 791 FunFam serine/threonine-protein kinase dst1 isoform X1 110 399 - -
Cre11g2191 791 Coils Coil 139 166 - -
Cre11g2191 791 MobiDBLite consensus disorder prediction 379 394 - -
Cre11g2191 791 MobiDBLite consensus disorder prediction 553 585 - -
Cre11g2191 791 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 111 758 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Cre11g2191 791 SMART serkin_6 113 365 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2191 791 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2191 K08838 - - csv:101214412 1255.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0552 Cre-Chr5:4904613 Cre11g2191 Cre-Chr11:33593124 2.80E-54 dispersed
Cre06g1433 Cre-Chr6:8671485 Cre11g2191 Cre-Chr11:33593124 4.20E-20 dispersed
Cre09g2066 Cre-Chr9:39714244 Cre11g2191 Cre-Chr11:33593124 1.30E-53 dispersed
Cre10g1342 Cre-Chr10:27000420 Cre11g2191 Cre-Chr11:33593124 1.20E-40 dispersed
Cre11g1591 Cre-Chr11:26097022 Cre11g2191 Cre-Chr11:33593124 1.10E-70 dispersed
Cre11g2191 Cre-Chr11:33593124 Cre10g1444 Cre-Chr10:28245196 2.70E-29 dispersed
Cre11g2191 Cre-Chr11:33593124 Cre05g1007 Cre-Chr5:9296725 2.20E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre11g2191 . 104 789 MAP Kinase Kinase Kinase Kinase AT1G53165 64.0 1.5e-225 779.6
Cre11g1591 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.6e-67 253.4
Cre07g1070 . 326 578 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.6e-65 247.3
Cre11g2191 . 104 788 MAP Kinase Kinase Kinase Kinase AT3G15220 65.9 4.0e-231 798.1
Cre11g1591 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.6e-67 254.6
Cre07g1070 . 326 578 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.5e-65 248.1
Cre11g1591 . 4 597 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 2.1e-170 596.7
Cre07g1070 . 60 578 MAP Kinase Kinase Kinase Kinase AT1G69220 60.5 4.3e-152 535.8
Cre07g1069 . 46 364 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 2.3e-81 300.8
Cre01g0552 . 88 755 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 6.2e-253 870.5
Cre05g0552 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.6e-96 350.9
Cre10g0347 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 2.9e-248 855.1
Cre10g0347 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.9 4.0e-247 851.3
Cre10g1435 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 2.8e-132 469.5
Cre10g0347 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 5.2e-118 422.2
Cre10g1435 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.6 7.7e-216 747.3
Cre01g0552 . 88 415 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.9e-103 372.9
Cre10g1435 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.2e-87 320.1
Cre10g0347 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.6e-75 280.0
Cre05g0552 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 60.2 2.6e-144 509.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64580 PF00069 Pkinase 2.90E-68 CL0016 Cre PK