Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2196 ATGGAAAGCCACTTCATTCTAGCTGGGATGCTCACAAGATGCAGTGTAAGGGAAGCTGTACCACCAACCAGCCCTCCTGATCAAGTATGCAGATTTAATTCAGGTTCCTATATTTTTGCTCCCACCATTTCCACAAGCAGCATCAACACCACCACCATCGCTACCGCCATTGAGCTGCCGGAGTTGGCAATGGAGGCAAAGAGCTTTGAAGGCAAGCATAATTTCAAAGATAAGCCTTACAAGGAAGGCATGGTCGATGACGATTTAGAATACGAGACGGATGAGGAAGAGGTTGGCGGAGGAGGCCATGGTGGTAGCAATGCTTGCAATGCATTGGGTTATTTTGAGAATGAGAAAAAGAAAAGAGGGGCAGCAGTTTCCGGCCGTGGAAGGTCCGGTGGAGGCGTCTCTTCGCCGAGTTGCCAAGCGCACAACTGTGCAACAGATTTGAGTGAAGCAAAGAGGTATCACCGGCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCGGCGGTTGTCATGGTTGCTGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTAACAGAATTTGATGAAGCAAAAAGGAGCTGTCGTCGAAGGCTGGCAGGGCACAACGAACGTCGGCGTAAGAGCTCGGCAGAGTGTCAAGGGGAAAGCACGAGCCGTAAAGGATCAGCCCCGCAGTCGAAGGAAAGCCATTGTAGGCAGCTGGTGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTCCAGGAAGTTCTGGCTATAAACACCTGCATATCAGATAA 798 50.5 MESHFILAGMLTRCSVREAVPPTSPPDQVCRFNSGSYIFAPTISTSSINTTTIATAIELPELAMEAKSFEGKHNFKDKPYKEGMVDDDLEYETDEEEVGGGGHGGSNACNALGYFENEKKKRGAAVSGRGRSGGGVSSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVEDQRSRIQMAPPGSSGYKHLHIR 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33665836 33667669 - CrPI670011_11g021960.1 Cre11g2196 513941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2196 265 ProSiteProfiles Zinc finger SBP-type profile. 138 215 IPR004333 GO:0003677(InterPro)
Cre11g2196 265 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 98 240 IPR044817 GO:0003677(InterPro)
Cre11g2196 265 MobiDBLite consensus disorder prediction 123 142 - -
Cre11g2196 265 MobiDBLite consensus disorder prediction 221 236 - -
Cre11g2196 265 FunFam Squamosa promoter-binding-like protein 14 132 202 - -
Cre11g2196 265 Gene3D - 131 202 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre11g2196 265 Pfam SBP domain 141 214 IPR004333 GO:0003677(InterPro)
Cre11g2196 265 MobiDBLite consensus disorder prediction 206 265 - -
Cre11g2196 265 SUPERFAMILY SBT domain 139 218 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2196 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0096 Cre-Chr5:1199573 Cre11g2196 Cre-Chr11:33665836 2.90E-29 dispersed
Cre06g1066 Cre-Chr6:4494632 Cre11g2196 Cre-Chr11:33665836 1.70E-29 dispersed
Cre11g2196 Cre-Chr11:33665836 Cre11g2307 Cre-Chr11:34665818 1.10E-27 dispersed
Cre11g2196 Cre-Chr11:33665836 Cre03g0912 Cre-Chr3:7876694 5.00E-33 wgd
Cre11g2196 Cre-Chr11:33665836 Cre04g1926 Cre-Chr4:36805536 9.80E-29 wgd
Cre11g2196 Cre-Chr11:33665836 Cre07g0606 Cre-Chr7:3873762 9.50E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g192 . . . Bda09g00515 . . . . . . . Cma09g00854 . Car09g00768 Sed04g2406 Cpe06g00681 . Bhi09g03443 Tan01g4381 Cmetu07g2111 . Hepe01g1395 Mch11g1055 . Cla11g01751 Cam11g1819 Cec11g1839 Cco11g1845 Clacu11g1979 Cmu11g1789 Cre11g2196 Cone6ag0159 Cone9ag0183 . . Lsi04g02062 Csa04g02332 Chy07g00064 Cme07g00585 . . . . . . . . . . Cmo09g00847 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002919 1 2 1 1 2 1 2 2 1 1 2 2 2 1 1 2 1 3 2 2 1 2 2 2 2 2 2 2 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54740 PF03110 SBP 4.10E-31 No_clan Cre TF