Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2197 ATGCCGGAAAACCCACATCACCCTCTTCTCCAAGTAACCCATGCCGGTGACGGCGGAACTGACCGGTCCATTTGGTGGAAGAAACTGTTCCACAAGGAGGAGGTCATCAAACAGCTCGCCATTTCATTTCCCATGATTCTCACTAATGTCTTCTACTACCTTATCCCTTTGATTTCCGTCATGTTCGCCGGCCATCTCGGCCAGCTCGAACTCGCCGGAGCTACTCTCGCCAATTCCTGGGCCACCGTCACTGGATTTGCTTTTATGACGGGGCTTAGCGGCGCACTGGAGACACTTTGCGGCCAAGGGTTTGGGGCGAAGTTATACAGATGCTTAGGGATTCATCTGCAATCTTCTTGCATAATCTCCTTCTCCTTCTCGATTTTCATTTCCCTTTTATGGTTCTACACAGAGCCGGTCTTGAAATTGCTGCAGCAAGATCCTGACGTGTCGAAAACGGCGGCTCGGTATGTGAAATTTCTGGTTCCTGGGATTTTCGCTTATGGGTTTCTACAGAACAGCGTGAGGTTTATTCAAGCTCAGTCGGATGTTATGTTTCTGGCGGTGCTCTCTGCAATTCCTTTAGTTCTTCACCTTGGTGTTGTTTATGCTTTTGTGAACTGGACAAGTTTGGGGCTGGAAGGAGCTGCTTTAGCTGCTTCCATTTCATTGTGGGTGGCTTTTCTGGCTGTGGCTATTCATGTGTTTATGTCTCAGAAATATGAACTCACATGGGGAGGATTCTCTGTTGAATCTTTCAACTACATATTTGTCAACTTGAAACTTGCTTTGCCTTCTGCTGCAATGGTTTGTTTGGAGTATTGGGCATTTGAGATTCTTGTGTTTTTGGCTGGATTGGCTCCAAACTCAGAAACAAATACATCTTTGATTGCAATTTGTGTGAACACAGAAGCTATTGCCTACATGATCACATATGGACTCAGTGCAGCTGCAAGCACAAGGGTGTCAAATGAGTTGGGGGCAGGCAATCCTGAGAAAGGAAGACAAGCCATGTTTGTCACTCTTCAACTCTCAGTTCTTCTAGGCCTTACAGTTGTTCTTCTTCTAGCATTTGGCCACAACATCTGGGCTGGATTCTTCAGTGATAGTCCTGTGATTATACAAGCCTTTGCCTCCATGACACCCCTTCTCACCATTTCCATACTTGCAGACTCCGTGCAAGGCGTATTATCAGGGGTGGCTAGAGGATGCGGGTGGCAACACATGGTTGTATTTGTAAATTTGTCTACATTCTATCTTGTTGGTATTTCAACCGCAGTCTTTCTGGAATTCAGAATGAAACTTTATGCCAAGGGGTTGTGGATTGGTTTGATCTGTGGTTTGTTATGCCAAACTTTGACTCTGTTGATATTAATAGTTCGCTCAAAGTGGACAAGAATTGAGCTCTCTGATCATCAAGGCAAACCAAATCCAGCTTTGGCTTGA 1446 45.57 MPENPHHPLLQVTHAGDGGTDRSIWWKKLFHKEEVIKQLAISFPMILTNVFYYLIPLISVMFAGHLGQLELAGATLANSWATVTGFAFMTGLSGALETLCGQGFGAKLYRCLGIHLQSSCIISFSFSIFISLLWFYTEPVLKLLQQDPDVSKTAARYVKFLVPGIFAYGFLQNSVRFIQAQSDVMFLAVLSAIPLVLHLGVVYAFVNWTSLGLEGAALAASISLWVAFLAVAIHVFMSQKYELTWGGFSVESFNYIFVNLKLALPSAAMVCLEYWAFEILVFLAGLAPNSETNTSLIAICVNTEAIAYMITYGLSAAASTRVSNELGAGNPEKGRQAMFVTLQLSVLLGLTVVLLLAFGHNIWAGFFSDSPVIIQAFASMTPLLTISILADSVQGVLSGVARGCGWQHMVVFVNLSTFYLVGISTAVFLEFRMKLYAKGLWIGLICGLLCQTLTLLILIVRSKWTRIELSDHQGKPNPALA 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33687241 33689871 + CrPI670011_11g021970.1 Cre11g2197 513942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2197 481 CDD MATE_eukaryotic 34 466 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cre11g2197 481 NCBIfam MATE family efflux transporter 44 441 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cre11g2197 481 Pfam MatE 44 203 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cre11g2197 481 Pfam MatE 265 426 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cre11g2197 481 PANTHER MULTIDRUG RESISTANCE PROTEIN 32 465 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2197 K03327 - - csv:101203764 823.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1676 Cre-Chr11:28111717 Cre11g2197 Cre-Chr11:33687241 6.10E-93 dispersed
Cre11g1677 Cre-Chr11:28129784 Cre11g2197 Cre-Chr11:33687241 1.20E-93 dispersed
Cre11g2197 Cre-Chr11:33687241 Cre05g2405 Cre-Chr5:35544801 8.40E-87 transposed
Cre11g2197 Cre-Chr11:33687241 Cre06g2600 Cre-Chr6:33685921 8.40E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g195 . . . . . . . . . . . Cma09g00855 . Car09g00769 . . . Bhi09g03441 . . . Hepe01g1394 Mch11g1059 . Cla11g01753 Cam11g1820 Cec11g1840 Cco11g1847 Clacu11g1980 Cmu11g1790 Cre11g2197 . . . . . . . . Blo07g00952 Blo10g00756 . Bda12g00836 . . . . . . Cmo09g00848 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67