Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2221 ATGATGAACAAATCCGTGGACGAAGACGAAGAAGAAGAGTGTTTCTACGAGTCTCTTGATCGCATTGCCTCCTCAGGTTCATGTTCCACTTCCAATTCCGATGATGACAGAGATTCAAACGCCAACTCCCCTAATTATGATTCCGAGCACCCTTTTCCGATACCAAAATTCCCAATGGCTGTTTCCAACTATGATATTTGGATCTCCGAGCCGGCTTCTGTGTTGGAGCGCCGTAGCCGTCTTCTTCGAGAAATGGGTCTTAGCGGTGACCCTTCTCTTTCACGGGCTAATACGGCCTTGGAATTGGATCATAGAGAAAAGGGTGTTGGCGATTTTGATCGATCGGTGTCGTCGGATTATTTGACTAGTCAACAACAGCAGCCCCCTGCAATCATCCGCTCGAAATCGGATGGTGCTGCAGATTGTAGCAGGAATGCGAGCCCTTCACACCCTTCCGGCAGCGATACTAATAACCAGTTTGTTAAGTCTCGAAGCTGTAAGAGCGATGGAGCTCCATCGGTTTCTTTCGCTACTTCACAGCATAAGCCGCCTTCTGGGAGAAATTGTAGATGGGCGGATGAGATTCGAAGTGATTCCTTGGTTGTGAATGCCAATTCGGATCCTGATCCATCGTTGATGTCTCAGAATGGTGTGAATAAACGAGAGGTTAGCGAGGATTCGGCTTGTTCTACTAGTGGAAAGGCCAATGAGAAAGCCTGCACTATCAAAGATCTTGACAATGGGAAAGAGTTTGTTGTGAACGAGATTACTGAAGATGGTATGTGGAACAAGCTCAAGGAAGTGGGGACTGGGAGACAGTTGACCATGGAGGAGTTTGAGATGTGTGTTGGACATTCGCCTATTGTTCAAGAACTGATGCGGCGGCAGAATGTGGAGGATGGTTGTAACGAAAATGTCGATTTAAATGTGAATGGAGATGTCGGTAGCAGTTCGAAATTGAAAAAGAAAGGAGGCTGGTTTAAGAGTATAAAGAGTGTTGCTAGCACAGTGAAGGGCCAAAAGGAGAGACGTAGCAGTGATGAGAGGGATACTTCATCTGAGAAGGGTGGACGACGGTCAAGCTCTGCAACAGATGATAGCCAAGATGTTTCCTTTCATGGTCCAGAGAGAGTAAGAGTTCGGCAATATGGAAAATCAAGTAAAGAATTGTCTGCACTCTACAAGAGCCAAGAGATACAGGCCCACAGTGGGTCAATATGGACCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCAAGTGCAGGAGAGGACCGTATTATTCATGTTTGGCAGGTCGTTGAGTCGGAGAAAAAGGGCGATCTACTGATGGAGAAACCTGAAGAAGGGAACTTGAGTTTCTTATTTGCAGCTAATGAGTCACCAGAGCCAACTTCACTATCTCCAAATGTCGATGGCCATCATGAGAAGAAGAGAAGAGGGAGATCTTCTATTAGCCGGAAATCAGTGAGCTTGGAACATGTGATTGTGCCGGACACTGTATTTGGGCTTTCAGAAAAACCTATCTGTTCATTCCAGGGGCATCTTGATGTTGTGCTTGACCTATCTTGGTCCAAATCTCAGCATTTGCTCTCGTCTTCAATGGATAAAACTGTGCGGCTCTGGCACTTGTCAAGCAAATCCTGTTTGAAAATATTTTCGCACAGTGATTATGTAACTTGCATCCAGTTTAATCCTATTGATGATAGATACTTCATTAGTGGATCGTTAGATTCAAAAGTTCGTATATGGAGTATCCCAGATCGTCAAGTTGTTGATTGGAGCGACTTGCATGAGATGGTGACCGCTGCTTGTTATACACCTGATGGCAAGGGTGCTTTGGTTGGTTCTTACAAGGGAAGCTGCCGATTGTACAGTACTTCTGAGAACAAGATGCAGCAAAAAAGTGAGATAAATCTGCAGAACAAGAAGAAAAAATCTAGTCACAAGAAAATAACTGGGTTCCAGTTTGCTCCAGGAAGTTCTTCAGAAGTGCTCATTACATCTGCAGATTCACGCATCCGAGTGGTTGATGGTGTCGATCTGGTCCAGAGGTTTAAAGGGTTCCGAAATACAAACAGCCAAATCTCTGCCTGCCTTTCGGCGAATGGCAGGTATGTGATATCGGCCAGTGAGGACTCTCATGTTTACGTATGGAAGCATGAAGCAGATTCTCGACCGAGTAGGAGCAAAGGAGTGACAGTCGTTCGATCATACGAGCATTTCCACTGTCCGGATGTCTCTGTGGCTATTCCTTGGCCTGGTATGGGTGACACATGGGGACTTAACGACGATTATTGTGGAGATGACAATGTGATTGAAAATCATCACGATGAAGTCTTCTCCGCTAACCATCCCCCTTCACCGGTGGAGGCAGAAAACGGCAGTGAGGATTCACTGTTGGCTTCTGGTTGCACCAACAGCCCTCTTCATGGAACTCTTTCAAGTGCAACCAACAGCTACTTCTTTGACAGAATCTCAGCAACATGGCCAGAGGAAAAGCTTGTTTTGAACACTCGGAACAACCGTAGCCCTCATTCCAGTATGGACATTGCCAGCGGAATGTTCCAAGGCTCATCAGCATGGGGTATGGTGATCGTAACTGCAGGTCTTCGAGGCGAAATCAGAACTTTCCAAAATTTTGGATTTCCAAGACAATGTTGGGTGAGATTTGTAATGTTAGCAGAATTAAGTTTCTTGTTACCCTGTGCTTGTGCTCGTCGGGCGGGGGCGATACCGGGAGCCAGTCTGGTGGAGAGTGGCGGGAAAAAGTATAGATTTGTGAAGGGAAAAACTGAAAAGGGTGATTTAGCTTCTCAAACCATCGATTTTGTATTCTCTGGTTGCTCCTTTTTTGTTCTAATGGCTCTCCAAGCTGCTTCTCTGGTTTCCCCTGCTCTCTCTGTTCCTAAAGAGGGGAAATCTTGTGTATGCTTGAAGGATTCTAGTTTTTTTGGGATTTCATTCTCCGATCATCTCAAATCTGAATTCACTTCATCTACATTGAGATGTAAGATAGAATTGAACCAGCAGATTGGTGCAATCAGGGCTCAAACAACTGCTACCACAACTCCAGCAGTAAACAAAGCTGCCCCAGATGGGAAGAAAACTCTCAGAAAAGGTAGTGTTGTGGTCACTGGAGCCTCTTCTGGGTTGGGATTAGCCACAGCCAAGGCTCTGGCTGAAACTGGAAAATGGCATGTCATTATGGCTTGTAGAGACTTTCTCAAGGCTGAAAGAGCTGCCAAATCTGCTGGCATTGCCAAGGAAAACTACACAGTTATGCATTTGGACCTTGCCTCGCTCGACAGTGTTCGCCAGTTTGTCGACAACTTCAGGCAGTCAGGCAGGCCACTTGATGTTCTTGTGTGCAATGCTGCTGTTTACCTACCAACTGCTAAAGAGCCTACCTTCACTGCTGAAGGTTTTGAACTTAGTGTTGGAACTAACCACCTTGGTCATTTCCTCCTCTCCCGTTTGTTGTTAGAGGATTTGAACAAATCTGATTACCCCTCAAGACGGCTCATCATTGTCGGATCGATAACCGGGAACACAAATACCTTGGCTGGAAATGTACCTCCTAAGGCCAACCTTGGAGACCTCAGGGGACTTGCTGGTGGACTAAACGGCCTAAACAGCTCGTCGATGATCGACGGTGGTGAGTTTGATGGTGCCAAGGCATACAAGGACAGCAAAGTGTGCAACATGCTCACCATGCAAGAGTTCCACAGGCGGTACCACGAGGAAACCGGCATCACATTTGCTTCCCTCTACCCCGGATGCATTGCTACAACTGGTTTGTTCAGAGAGCACATTCCCTTGTTCAGATTACTTTTCCCTCCATTCCAAAAGTACATCACCAAGGGCTATGTTTCAGAAGAAGAAGCAGGGAAAAGACTGGCTCAGGTTGTGAGCGAGCCGAGCTTGACAAAATCGGGTGTGTATTGGAGCTGGAACAAGAACTCGGCTTCGTTTGAGAATCAGTTGTCTCAAGAAGCAAGTGATGTAGAGAAAGCTCGTAAAGTGTGGGAGCTGAGTGAGAAACTTGTTGGTTTGGCTTAA 4059 46.12 MMNKSVDEDEEEECFYESLDRIASSGSCSTSNSDDDRDSNANSPNYDSEHPFPIPKFPMAVSNYDIWISEPASVLERRSRLLREMGLSGDPSLSRANTALELDHREKGVGDFDRSVSSDYLTSQQQQPPAIIRSKSDGAADCSRNASPSHPSGSDTNNQFVKSRSCKSDGAPSVSFATSQHKPPSGRNCRWADEIRSDSLVVNANSDPDPSLMSQNGVNKREVSEDSACSTSGKANEKACTIKDLDNGKEFVVNEITEDGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGCNENVDLNVNGDVGSSSKLKKKGGWFKSIKSVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGDLLMEKPEEGNLSFLFAANESPEPTSLSPNVDGHHEKKRRGRSSISRKSVSLEHVIVPDTVFGLSEKPICSFQGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPIDDRYFISGSLDSKVRIWSIPDRQVVDWSDLHEMVTAACYTPDGKGALVGSYKGSCRLYSTSENKMQQKSEINLQNKKKKSSHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVQRFKGFRNTNSQISACLSANGRYVISASEDSHVYVWKHEADSRPSRSKGVTVVRSYEHFHCPDVSVAIPWPGMGDTWGLNDDYCGDDNVIENHHDEVFSANHPPSPVEAENGSEDSLLASGCTNSPLHGTLSSATNSYFFDRISATWPEEKLVLNTRNNRSPHSSMDIASGMFQGSSAWGMVIVTAGLRGEIRTFQNFGFPRQCWVRFVMLAELSFLLPCACARRAGAIPGASLVESGGKKYRFVKGKTEKGDLASQTIDFVFSGCSFFVLMALQAASLVSPALSVPKEGKSCVCLKDSSFFGISFSDHLKSEFTSSTLRCKIELNQQIGAIRAQTTATTTPAVNKAAPDGKKTLRKGSVVVTGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGIAKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSRRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSSMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDVEKARKVWELSEKLVGLA 1352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33913364 33925823 - CrPI670011_11g022210.1 Cre11g2221 513966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2221 1352 MobiDBLite consensus disorder prediction 337 383 - -
Cre11g2221 1352 PRINTS Glucose/ribitol dehydrogenase family signature 1116 1127 IPR002347 -
Cre11g2221 1352 PRINTS Glucose/ribitol dehydrogenase family signature 1041 1058 IPR002347 -
Cre11g2221 1352 PRINTS Glucose/ribitol dehydrogenase family signature 1249 1266 IPR002347 -
Cre11g2221 1352 MobiDBLite consensus disorder prediction 116 132 - -
Cre11g2221 1352 CDD LPOR_like_SDR_c_like 1039 1351 - -
Cre11g2221 1352 SMART WD40_4 392 431 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 SMART WD40_4 545 584 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 SMART WD40_4 638 677 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 SMART WD40_4 678 719 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 SMART WD40_4 587 625 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 SMART WD40_4 504 542 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 MobiDBLite consensus disorder prediction 140 185 - -
Cre11g2221 1352 MobiDBLite consensus disorder prediction 337 362 - -
Cre11g2221 1352 ProSiteProfiles Trp-Asp (WD) repeats profile. 511 551 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 MobiDBLite consensus disorder prediction 203 230 - -
Cre11g2221 1352 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 551 585 - -
Cre11g2221 1352 NCBIfam protochlorophyllide reductase 1038 1352 IPR005979 GO:0016630(InterPro)
Cre11g2221 1352 FunFam WD repeat-containing protein 44 492 758 - -
Cre11g2221 1352 MobiDBLite consensus disorder prediction 460 485 - -
Cre11g2221 1352 MobiDBLite consensus disorder prediction 22 47 - -
Cre11g2221 1352 Pfam short chain dehydrogenase 1042 1184 IPR002347 -
Cre11g2221 1352 Pfam WD domain, G-beta repeat 692 718 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 Pfam WD domain, G-beta repeat 397 430 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 Pfam WD domain, G-beta repeat 506 541 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 Pfam WD domain, G-beta repeat 547 584 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 PRINTS G protein beta WD-40 repeat signature 571 585 IPR020472 -
Cre11g2221 1352 PRINTS G protein beta WD-40 repeat signature 418 432 IPR020472 -
Cre11g2221 1352 PRINTS G protein beta WD-40 repeat signature 529 543 IPR020472 -
Cre11g2221 1352 MobiDBLite consensus disorder prediction 111 188 - -
Cre11g2221 1352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1037 1320 IPR036291 -
Cre11g2221 1352 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 432 - -
Cre11g2221 1352 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 585 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 SUPERFAMILY WD40 repeat-like 395 721 IPR036322 GO:0005515(InterPro)
Cre11g2221 1352 Gene3D - 383 739 IPR015943 GO:0005515(InterPro)
Cre11g2221 1352 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 511 545 - -
Cre11g2221 1352 MobiDBLite consensus disorder prediction 22 54 - -
Cre11g2221 1352 Gene3D - 1030 1352 - -
Cre11g2221 1352 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 432 IPR001680 GO:0005515(InterPro)
Cre11g2221 1352 PANTHER WD REPEAT DOMAIN 44 13 884 IPR040324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2221 K20241 - - csv:101208316 1639.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2062 Cre-Chr2:34127684 Cre11g2221 Cre-Chr11:33913364 1.50E-177 dispersed
Cre04g0917 Cre-Chr4:27855469 Cre11g2221 Cre-Chr11:33913364 3.20E-154 dispersed
Cre10g2208 Cre-Chr10:36560237 Cre11g2221 Cre-Chr11:33913364 8.80E-24 dispersed
Cre11g2221 Cre-Chr11:33913364 Cre09g2401 Cre-Chr9:43386049 7.20E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34