Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2243 ATGAATGAGAAGGCCAACGTTACCAAGGAGCTCAACGCCCGCCACAGAAAGATATTAGAAGGGCTTCTTAAGCTGCCAGAAAATAGGGAGTGTGCTGATTGCAAAGCTAAGGGACCACGATGGGCTAGTGTTAATTTAGGCATTTTTATATGTATGCAATGTTCTGGGATCCACAGAAGTCTTGGTGTTCACATATCAAAGGTACGGTCTGCTACCTTGGACACTTGGCTTCCAGAGCAGGTTACTTTTATACAATCAATGGGGAATGAGAAGGCAAACAGTTATTGGGAGGCGGAGCTACCACCAAATTATGACAGAGTTGGGATTGAGAATTTTATTCGTGCAAAATATGAAGACAAGAGATGGGTTCCTAAGGATGGCAAACCAAGATCACCATCTCGAGTACAGGAGGAAAAGCCTTCTTTGCATGGGCATAGGCCTGCAGAAAGAAGTGGGTCAGGGTATTCAGGCCATTCTGAAAATTTGTTTGAGGAAAGGAAAAGAATTCAAGCTCATAGTGTGAAGGAGAGTATACCTGCCTCGAGAGTTAGTCTTCCTGTTCCTCCCAGAGGACCTGAACAAGTTGCTCCAGCGCCCAAACCACGCCAGGAGCAAAAACCTGAACCAGTTGTACAGCAAGCTGAAGCAACGAAACAGACTATAAATGATGCTCCAGCTGTCTCTCCTCCAAAAGTTGATTATGCTACTGATCTTTTTAACATGCTATCCTTTGATGGACCCTCTGACAATGGTTCGGCAGCGGTTTCTACAGATGATAGTGCATGGGCTGGCTTCCAGTCTGCTGAAGAAGCATCATCAGCAGAGAAACCTGGTCCAGCAAAACCAGCTGAAGCCATTACCCAATCCACTTCTGGAATTGAGGATCTTTTCAAAGATACAACTACAGTTTCACCTTCTATAGTTCCCGAAAAACCTGTGAAAGATGTTAAAACTGATATAATGAGTCTTTTTGAAAAGTCCAGTATGGTCTCTCCATTTGCTATGCATCAACAGCAACTTGCCATGCTAGCTCAGCAACAATCACTTCTCATGGCCGCTGCAGCTAAATCAGCTGCTGGAGACGCAAAATTTAGCAATACTTCTCATCAACAGCAACTTGCCATGCTAGCTCAGCAACAATCACTTCTCATGGCTGCTGCAGCTAAGTCAGCTGCTGGGGACGCAAAATTTAGCAATACTCAAGCCTCTGTCCCCAATGGTACCAATGTTCCTCCTCAAAGTTGGCCAAATGTTGCCTACCCGATTCCTGGACTGATGATGCAAATAGGTGCCCAGGGTGGGCCACAAACTACTGTGCAGGCAATGAACAGGGGGCTGGCAAATCCAGTTGGGAGTTCTGTTCCATATCCGACATCTAGCCTTTATAGCCTGGGGCAAGTTTCTTCAGTGCCGGTGAACGGTGTGACCCCCATAGCAAAAAATAAACCTCAATCGACAGCGTCGGTATCATCAGCTACTCCTTCACAGTCGGGAAAAGAGTACGATTTCTCCTCTTTAACACAAGGGTAG 1530 45.82 MNEKANVTKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVTFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVPKDGKPRSPSRVQEEKPSLHGHRPAERSGSGYSGHSENLFEERKRIQAHSVKESIPASRVSLPVPPRGPEQVAPAPKPRQEQKPEPVVQQAEATKQTINDAPAVSPPKVDYATDLFNMLSFDGPSDNGSAAVSTDDSAWAGFQSAEEASSAEKPGPAKPAEAITQSTSGIEDLFKDTTTVSPSIVPEKPVKDVKTDIMSLFEKSSMVSPFAMHQQQLAMLAQQQSLLMAAAAKSAAGDAKFSNTSHQQQLAMLAQQQSLLMAAAAKSAAGDAKFSNTQASVPNGTNVPPQSWPNVAYPIPGLMMQIGAQGGPQTTVQAMNRGLANPVGSSVPYPTSSLYSLGQVSSVPVNGVTPIAKNKPQSTASVSSATPSQSGKEYDFSSLTQG 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34193952 34199727 + CrPI670011_11g022430.1 Cre11g2243 513988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2243 509 MobiDBLite consensus disorder prediction 123 146 - -
Cre11g2243 509 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 364 IPR044520 GO:0005096(InterPro)
Cre11g2243 509 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096(InterPro)
Cre11g2243 509 Pfam Putative GTPase activating protein for Arf 17 124 IPR001164 GO:0005096(InterPro)
Cre11g2243 509 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Cre11g2243 509 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096(InterPro)
Cre11g2243 509 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096(InterPro)
Cre11g2243 509 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096(InterPro)
Cre11g2243 509 MobiDBLite consensus disorder prediction 265 293 - -
Cre11g2243 509 SUPERFAMILY ArfGap/RecO-like zinc finger 15 125 IPR037278 -
Cre11g2243 509 MobiDBLite consensus disorder prediction 210 224 - -
Cre11g2243 509 CDD ArfGap 19 117 - -
Cre11g2243 509 MobiDBLite consensus disorder prediction 473 509 - -
Cre11g2243 509 MobiDBLite consensus disorder prediction 123 159 - -
Cre11g2243 509 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Cre11g2243 509 SMART arf_gap_3 16 130 IPR001164 GO:0005096(InterPro)
Cre11g2243 509 MobiDBLite consensus disorder prediction 171 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2243 K12486 - - csv:101214277 853.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1373 Cre-Chr1:26915925 Cre11g2243 Cre-Chr11:34193952 3.30E-57 dispersed
Cre07g1552 Cre-Chr7:30925742 Cre11g2243 Cre-Chr11:34193952 5.60E-22 dispersed
Cre09g1144 Cre-Chr9:12432963 Cre11g2243 Cre-Chr11:34193952 1.20E-17 dispersed
Cre10g0419 Cre-Chr10:3054363 Cre11g2243 Cre-Chr11:34193952 7.70E-17 dispersed
Cre10g2209 Cre-Chr10:36583450 Cre11g2243 Cre-Chr11:34193952 2.60E-18 dispersed
Cre11g2243 Cre-Chr11:34193952 Cre04g2119 Cre-Chr4:38444297 1.70E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g290 . . . . . . . . . . . . Car01g01000 . . Cpe06g00717 Cpe02g00724 . . . . . . . Cla11g01802 Cam11g1868 Cec11g1892 Cco11g1898 Clacu11g2031 Cmu11g1836 Cre11g2243 Cone6ag0115 Cone9ag0133 . . Lsi04g01282 . . . . . . . Bpe11g00502 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005696 1 1 2 2 2 0 2 1 0 1 1 1 1 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 1 1 35