Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2261 ATGGAGAATTTGGAATTTGGATTTCTATTCCCTCTTTTCTTAATTTCCCCATCTTTTCTTTTACCTTCTTTGCTTCTAAAAAACTACGACCACCGACCCACTTCCAGACTGCGAGAAGAGTGGGGGCGGAGAGAAGCGGCGGCGTACGGCGGAGAGAGGACAGGGAGAGAGATCGCTCCGGCTACTGATGGAAGTTTTTCGAAGTTGTCTCTCTCTCGCTTGTTTAGTGGAAGCACCGGCTGGCCCTCATTAGCAACTGTAACCTGTTTGATCAAAAGTCTTAAAGGAACTTTGAGAGTTCTTGATTTTAGAAGGTTGGTTTTGCGATTCACGATCTGGGTGAAGGAAATGGCTCGATCGGATGAGAATAACCCCGGAGTGATCGGACGGGCAAATCTCCATGGGAGTATACGAATTGGTGGTGGTGGCGGTGGCAAATTTGTGGTGGGGATGGGTCAAAACCGCACAGCTTTGAGCAGCATTAATGAAAATGTTGCAGCAGCTCCTCCTGCCCCTCATCCCTGTGCAGTCCTCAAAAGAGGCCTAACAGAAACTGATGTTGTTGTCAACAATAAAGACCCACCGATTCCAATTCATCGACCTATCACTCGGAAGTTTGCAGCTCAGCTGGCCAATAAGCAGCAGCCACCTGTGGCTGAGGTTGATAAAAAGCCACTTGAATCTGCTCCAACTCGAAAAGAGTCTTCAGATCATCATCCCATCGTAGAGGAAGATGATTCCATGGGTGAATCAGCAGTTCCGATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAGCCAGTAATTGATATAGACAGCCGTGATAAGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTTCTACAGGAAATCCGAGGTTTCTGGCTGTGTCCCACCAAACTACATGGCTCAACAAGCAGATATTAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAATTTGAGCTGATGGAGGAGACATTGTACCTAACAGTCAACCTGATTGATAGATTCTTAGCGGTTCAGTCAGTGGTGAGAAAGAAGCTTCAGCTTGTTGGAGTGACGGCCATGCTTATAGCCTGCAAGTATGAAGAGGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCTGACAAAGCCTACACCCGAAAAGAAGTTCTGGACATGGAGAAGTTGATGATAAATACCTTACAGTTCAATCTGTCTGTTCCAACACCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCACAATCTGATAGAGAGCTGGACCTGCTCTCCTTCTTCATGGTGGAGCTATGTCTAGTGGAATATGAAATGCTAAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGCACAGTGAATGGCTTCAAAGAATGGAGCAAAACCAGTGAGTGGCACACTGGCTACTCACAGGAACAACTTCTGGAATGTTCAAGGCTGATGGTGGGGTTCCATCAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGTACATCCAAGTTTGGATATGCTGCTAGAAATTCTGGGTCCAGTTGGGTTCTTCTAGCAATTTCTGGATATCCTGTGATAGAGATATTTGAATAG 1698 45.23 MENLEFGFLFPLFLISPSFLLPSLLLKNYDHRPTSRLREEWGRREAAAYGGERTGREIAPATDGSFSKLSLSRLFSGSTGWPSLATVTCLIKSLKGTLRVLDFRRLVLRFTIWVKEMARSDENNPGVIGRANLHGSIRIGGGGGGKFVVGMGQNRTALSSINENVAAAPPAPHPCAVLKRGLTETDVVVNNKDPPIPIHRPITRKFAAQLANKQQPPVAEVDKKPLESAPTRKESSDHHPIVEEDDSMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDSRDKKDQLAVVEYIDDLYAFYRKSEVSGCVPPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYTRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTVNGFKEWSKTSEWHTGYSQEQLLECSRLMVGFHQKAGTGKLTGVHRKYCTSKFGYAARNSGSSWVLLAISGYPVIEIFE 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34371556 34378364 - CrPI670011_11g022610.1 Cre11g2261 514006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2261 565 SMART cyclin_7 338 422 IPR013763 -
Cre11g2261 565 SMART cyclin_7 435 517 IPR013763 -
Cre11g2261 565 CDD CYCLIN_AtCycB-like_rpt1 282 426 - -
Cre11g2261 565 Pfam Cyclin, C-terminal domain 431 543 IPR004367 -
Cre11g2261 565 SUPERFAMILY Cyclin-like 293 428 IPR036915 -
Cre11g2261 565 CDD CYCLIN_AtCycB-like_rpt2 431 544 - -
Cre11g2261 565 PANTHER CYCLINS 279 535 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre11g2261 565 FunFam G2/mitotic-specific cyclin-1 408 543 - -
Cre11g2261 565 MobiDBLite consensus disorder prediction 209 245 - -
Cre11g2261 565 Gene3D - 317 429 - -
Cre11g2261 565 SUPERFAMILY Cyclin-like 430 544 IPR036915 -
Cre11g2261 565 ProSitePatterns Cyclins signature. 333 364 IPR048258 -
Cre11g2261 565 Pfam Cyclin, N-terminal domain 303 429 IPR006671 -
Cre11g2261 565 Gene3D - 303 542 - -
Cre11g2261 565 MobiDBLite consensus disorder prediction 225 245 - -
Cre11g2261 565 SMART Cyclin_C_2 431 548 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0641 Cre-Chr4:24012467 Cre11g2261 Cre-Chr11:34371556 1.70E-68 dispersed
Cre04g1707 Cre-Chr4:35252368 Cre11g2261 Cre-Chr11:34371556 8.80E-131 dispersed
Cre09g0228 Cre-Chr9:2391492 Cre11g2261 Cre-Chr11:34371556 9.80E-46 dispersed
Cre11g2261 Cre-Chr11:34371556 Cre05g1879 Cre-Chr5:30930794 6.90E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2261 K21777 - csv:101223199 765.763