Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2274 ATGATGGAGTGGCAGAACCAGCAGCAACAGAACCAAACTGAGCAATTGCAAATGCAAATGCAGGTCGAGCAATTGAGCAACGCCGATGGAGTTAATGGCCTCTATGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTTGTCGAGATGCACAAGGCAATCACTGCCCAGCAGGACCTTGCGGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCGTCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACGCCTGTGCAGCTTCAAATTCTTGAGCAGATATTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAGCATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAATAATGCAGACTCCGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAACTTATGAACATTTCGTTCCCAAGTCAGACAACATGTACTCTCAGAGAACTGATTTCAGTACTGAAATACTTTCCTTTGATGCACAGTCGAATAAAGGGGAGCCCATGTTTCAGTCATTCGGATCTGGTCATATCAGTCAGATGAATCCATTACAGAATCATAGAAATAATCTGTCAAATGATAAAATGAACGTAGCAGATTACTCTCCTTACACTCCTTGTGAAGGATATCACTTGGCCGAGTGA 819 43.96 MMEWQNQQQQNQTEQLQMQMQVEQLSNADGVNGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETFQTYEHFVPKSDNMYSQRTDFSTEILSFDAQSNKGEPMFQSFGSGHISQMNPLQNHRNNLSNDKMNVADYSPYTPCEGYHLAE 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34473936 34475330 + CrPI670011_11g022740.1 Cre11g2274 514019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2274 272 Gene3D - 101 165 - -
Cre11g2274 272 CDD homeodomain 99 161 IPR001356 GO:0003677(InterPro)
Cre11g2274 272 SUPERFAMILY Homeodomain-like 98 161 IPR009057 -
Cre11g2274 272 MobiDBLite consensus disorder prediction 174 190 - -
Cre11g2274 272 MobiDBLite consensus disorder prediction 157 193 - -
Cre11g2274 272 ProSiteProfiles 'Homeobox' domain profile. 95 160 IPR001356 GO:0003677(InterPro)
Cre11g2274 272 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 250 IPR044559 GO:0003700(InterPro)
Cre11g2274 272 SMART HOX_1 97 164 IPR001356 GO:0003677(InterPro)
Cre11g2274 272 Pfam Homeodomain 99 159 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0291 Cre-Chr10:1808775 Cre11g2274 Cre-Chr11:34473936 4.20E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54748 PF00046 Homeodomain 8.60E-18 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2274 - - - 0.0