Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2280 ATGGCTACGGGTATAGATTTTTCACCTCCCTTCACTCTACTGGAAGGCGGCGGATACAATAAGGACAATGTATCAGCCACAGATGACGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGAGCAGTGGGAAGCCTCCCCGACACCTCTCAGTAATGCGACATAGTCTGAGCTCCATAAAGCTCCTTGGCCAAGCTGATTTAAGCTTGGATGCTGAAACTCTTGGGAATAAGTCACCTGATGGAAAAGCGGGATACTTACCTGTCTTTAGATCGGGTAGCTGTTCAGAAAGGGGACCTAAACAGTACATGGAAGACGAGCACATATGCATAGATGATCTTGTTGAACATGTCCATGCTTGTGCAGATTTCACTTCTCCTGGAGCTTTCTATGGTGTATTTGATGGCCATGGAGGTACAGACGCTGCTGCTTTTGTTAGAAAGAACATCCTCAGATTCATAGTCGAGGACTCCTGTTTTCCAATTAGTGTGGAGAAGGCAATTAAGAGTGCTTTTTTGAAAGCTGATTATGCTTTTGCTGATGCTAGTTCTCTGGATATCTCCTCTGGCACAACTGCCCTGACTGCTTTCATTTTTGGAAGAACAATGATTATTGCGAATGCTGGGGATTGTCGAGCTGTTCTGGGGAGGAGGGGGAAGGCTATTGAGGTGTCGAAGGATCACAAGCCCAACTGTGCTTCTGAAAAGCTCAGAATTGAGAAACTGGGTGGGGTGATCTATGATGGGTACCTCAATGGCCAGCTCTCTGTTGCACGTGCTATAGGAGATTGGCACATGAAAGGTGCTAAGGGTTCTGCTTGCCCACTGAGTGCCGAGCCAGAGCTGCAGGAACTGAATTTGACGGAGGAAGATGAATTTCTAATAATGGGATGCGATGGGCTTTGGGATGTGATGAGCAGCCAGTATGCTGTTACAATGGCAAGGAAAGAGCTGATGCTACATAATGATCCAGAAAGGTGTTCAAGAGAGCTGGTAAGGGAGGCACTAAAGCGCAATACATGCGATAATTTAACTGTTATTGTGGTCTGTTTTTCGGCTGATCCGCCCCCTCGGATAGAAATTCCTCAAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAAGGTGTATTGGACTGCAATTCTTGA 1161 45.56 MATGIDFSPPFTLLEGGGYNKDNVSATDDESSDSFNSLKQMSSGKPPRHLSVMRHSLSSIKLLGQADLSLDAETLGNKSPDGKAGYLPVFRSGSCSERGPKQYMEDEHICIDDLVEHVHACADFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIVEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELQELNLTEEDEFLIMGCDGLWDVMSSQYAVTMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSADPPPRIEIPQTRVRRSISLEGLNLLKGVLDCNS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34511999 34515142 - CrPI670011_11g022800.1 Cre11g2280 514025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2280 386 MobiDBLite consensus disorder prediction 29 44 - -
Cre11g2280 386 Gene3D - 76 354 IPR036457 -
Cre11g2280 386 SUPERFAMILY PP2C-like 85 352 IPR036457 -
Cre11g2280 386 SMART PP2C_SIG_2 106 351 IPR001932 -
Cre11g2280 386 PANTHER PROTEIN PHOSPHATASE 2C 68 351 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Cre11g2280 386 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169(InterPro)
Cre11g2280 386 MobiDBLite consensus disorder prediction 18 49 - -
Cre11g2280 386 SMART PP2C_4 81 349 IPR001932 -
Cre11g2280 386 ProSiteProfiles PPM-type phosphatase domain profile. 91 351 IPR001932 -
Cre11g2280 386 Pfam Protein phosphatase 2C 92 343 IPR001932 -
Cre11g2280 386 CDD PP2Cc 90 351 IPR001932 -
Cre11g2280 386 FunFam Probable protein phosphatase 2C 22 76 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2032 Cre-Chr2:33842707 Cre11g2280 Cre-Chr11:34511999 1.20E-88 dispersed
Cre05g1787 Cre-Chr5:29820065 Cre11g2280 Cre-Chr11:34511999 1.10E-34 dispersed
Cre06g1191 Cre-Chr6:5767442 Cre11g2280 Cre-Chr11:34511999 2.20E-80 dispersed
Cre11g2280 Cre-Chr11:34511999 Cre09g0461 Cre-Chr9:4379641 1.50E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2280 K14803 - csv:101205355 764.222