Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2281 ATGCTGTGGGTTGCGGCTAAGATAGAAAGTGATTCTCCTCCGCTTTTCGGCGATCCCGTTTCGCCTCATCCCGAGAAAGTTGAAAGTGGGAGAATTTTGAGAGTGGCTGTGGTGAAACCTAATCGTCGTCCACTGGAAGAGGCCGAGTCCGAGCCGCCCACTAGGGCGGAAGGGCCCACCTGTGGAGTATCGACGAGCGACTGTAGATGCTGTCACTGTTGCTGCACAAAGATTGGGCCTCCAAGTAAAGAACACTCCCCGACTTTTGCTTCATCAACCAATGAAGGAATTTTCTGCTTTTTGTTTTCGAAAAATTTTCACGTGATTTCGCTGCGGTGCGAGTATTTGCCAGCTTCCATCAAACCATCGGTTGTGAACATTGGAGCTATTTTATCTTTTAATTCTACCATTGGAAAAGTTGCTACGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCCAGCATTCTTCCTGGAACCGACCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGTTTTGCAACTTATGGAGAATGAAACCGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTCCCTCTGGTATCATTTTCGGCTACTGATCCTACTCTCTCTGCCCTTCAGTTTCCTTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAGATGACTGCAGTTGCTGAGATTGTTGAGTATTATAGTTGGAAAGAGGTCATTGCTATATATGTAGATGATGATTATGGGTGGAATGGAGTTGCGACATTGGGCGATAAACTTGCTGAAAGGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCCAGATTCTGTGGATAATCGAGCCCGAGTTATGGATCAACTTGTTAAAGTTGCACTGATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCTGGATTAGGCGCCTTAGTCTTTTCAGTGGCTAAGTACCTCCAAATGATAGGCAATGGATATGTATGGATAGCAACTGATTGGCTTTCGTCTCTATTAGACAGTGTCGTTCCTCTTCCTCTCGAGATCATGGAATCGATGCAAGGTGTTCTTTCTCTACGACAGCACACAGCAGAATCAGATAAAAAGAGAGCTTTTATTTCCAGGTGGAATAAGTTAACAGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTGTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATCGACAAATTTTTCAATCAAGGTGGGGTCATCACACACTCTAATGACTCCAAGCTGCATTTCAGTGAAAGTGGTGATCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAACCGCCTGCTGAATAACATATTGGAGAGCGATTTTGTTGGTCTGACTGGTGCCATTAAGTTTGATTTGGACAGATCCCTTCTTCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGAAGGGTGGGTTACTGGTCCAACTATTCTGGTTTATCAATTGATGTTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTATGAGGTGATATGGCCAGGAAATACAATAGAAAAGCCTCGAGGATGGGTATTTCCGAACAATGGGAAGCTATTAAAAATTGGAGTGCCACTCCGGGTCAGTTATAAGGAGTTTGTATCAAAAATCAAAGGGACCGAAAATTTCCAGGGTTTCTGCATCGATGTGTTTACAGCTGCTGTAAACTTATTGCCGTATGCTGTTCCACACCAATTTATAGCCTTTGGTGATGGCCATCACAATCCAAATTACACAGATCTTGTGTACGGGATTACAACTGGCAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGGACAAGGCTTGTAGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACTGAACACTGGGGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTCACAGCTAGTTTCTTCCTTTTTATTGGAATAGTTGTCTGGATTCTGGAGCATAGGACGAATGATGAATTCAGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAAAACACAATTAGCACTCTTGGCCGCCTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATAGTAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGAGGGAAGGTGGTGAACCGATAGGTTTCCAAGTTGGATCGTTTGCTGAACGTTATCTGAGCGAGGAGCTGAACATATCTAGATCCAGGCTTGTTCCTCTTGGATCACCCGAAGAATATGCCAAGGCACTTGAGCTTGGCCCTGACAAGGAGGGGGGTGTTGCTGCTATAGTTGACGAACTTCTATATGTAGAAAGTTTCCTCTCGAGACAATGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGATTCTCCCTTGGCCATAGACTTGTCAACTGCCATTTTGCAGCTCTCGGAGAATGGTGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCACCATGGACAATGCAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGTCTATTTCTAATCTGTGGGATAGTTTGTTTCATTGCCCTTGCCATATATTGCTTTCAGATTATTCGTCAGCTATACCGTGCCGATGCACAAGAATCTGATCTGTCTAGCAGTAGTGGATCACATTCTAACCGCTTTCGAAGAATTATATCGATATTGGATGAGAAGAAAGAACCGTCTAAAAGGGGAAGCAAAAGAAGGAAAGTTGAGAAATCATCTGAAAATGATAAGGACGATGATAATTTGGAGGCTGATCCTTGA 3036 43.68 MLWVAAKIESDSPPLFGDPVSPHPEKVESGRILRVAVVKPNRRPLEEAESEPPTRAEGPTCGVSTSDCRCCHCCCTKIGPPSKEHSPTFASSTNEGIFCFLFSKNFHVISLRCEYLPASIKPSVVNIGAILSFNSTIGKVATIAIEEAVKDVNADPSILPGTDLWLQMQNSNCSGFLGMVEVLQLMENETVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEYYSWKEVIAIYVDDDYGWNGVATLGDKLAERRCKITYKVGISPDSVDNRARVMDQLVKVALMESRVMVLHVNPGLGALVFSVAKYLQMIGNGYVWIATDWLSSLLDSVVPLPLEIMESMQGVLSLRQHTAESDKKRAFISRWNKLTGGSLGLNAYGLYAYDSVWVVAHAIDKFFNQGGVITHSNDSKLHFSESGDLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDLDRSLLHPAYDIINVIGTGSRRVGYWSNYSGLSIDVPETLYSKPPNRSHANQKLYEVIWPGNTIEKPRGWVFPNNGKLLKIGVPLRVSYKEFVSKIKGTENFQGFCIDVFTAAVNLLPYAVPHQFIAFGDGHHNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFKKLNTGAWAFLHPFSPAMWMVTASFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIETLREGGEPIGFQVGSFAERYLSEELNISRSRLVPLGSPEEYAKALELGPDKEGGVAAIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACTMDNAELESDRLQLKSFWGLFLICGIVCFIALAIYCFQIIRQLYRADAQESDLSSSSGSHSNRFRRIISILDEKKEPSKRGSKRRKVEKSSENDKDDDNLEADP 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34516349 34525306 + CrPI670011_11g022810.1 Cre11g2281 514026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2281 1011 Pfam Bacterial extracellular solute-binding proteins, family 3 579 681 IPR001638 -
Cre11g2281 1011 CDD PBP1_GABAb_receptor_plant 126 515 IPR044440 -
Cre11g2281 1011 Gene3D - 552 670 - -
Cre11g2281 1011 FunFam Glutamate receptor 556 672 - -
Cre11g2281 1011 SUPERFAMILY Periplasmic binding protein-like I 121 553 IPR028082 -
Cre11g2281 1011 Gene3D - 868 901 - -
Cre11g2281 1011 CDD GluR_Plant 559 902 - -
Cre11g2281 1011 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 125 980 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cre11g2281 1011 Gene3D - 240 514 - -
Cre11g2281 1011 Pfam Ligand-gated ion channel 903 934 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre11g2281 1011 SUPERFAMILY Periplasmic binding protein-like II 539 904 - -
Cre11g2281 1011 SMART GluR_14 562 904 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre11g2281 1011 FunFam Glutamate receptor 798 906 - -
Cre11g2281 1011 MobiDBLite consensus disorder prediction 976 1011 - -
Cre11g2281 1011 FunFam Glutamate receptor 672 802 - -
Cre11g2281 1011 Pfam Receptor family ligand binding region 143 499 IPR001828 -
Cre11g2281 1011 PIRSF IGluLR_plant 93 1010 IPR017103 -
Cre11g2281 1011 Gene3D - 671 799 - -
Cre11g2281 1011 Gene3D - 143 489 - -
Cre11g2281 1011 Gene3D - 831 867 - -
Cre11g2281 1011 MobiDBLite consensus disorder prediction 976 1003 - -
Cre11g2281 1011 FunFam Glutamate receptor 240 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1191 Cre-Chr2:11372832 Cre11g2281 Cre-Chr11:34516349 1.70E-285 dispersed
Cre02g1193 Cre-Chr2:11430267 Cre11g2281 Cre-Chr11:34516349 5.10E-282 dispersed
Cre02g1195 Cre-Chr2:11525470 Cre11g2281 Cre-Chr11:34516349 3.00E-261 dispersed
Cre04g1716 Cre-Chr4:35311216 Cre11g2281 Cre-Chr11:34516349 0.00E+00 dispersed
Cre08g1410 Cre-Chr8:27078533 Cre11g2281 Cre-Chr11:34516349 5.00E-104 dispersed
Cre11g2173 Cre-Chr11:33436864 Cre11g2281 Cre-Chr11:34516349 1.20E-103 dispersed
Cre11g2281 Cre-Chr11:34516349 Cre02g0670 Cre-Chr2:3645098 8.60E-275 wgd
Cre11g2281 Cre-Chr11:34516349 Cre08g0908 Cre-Chr8:22207375 7.60E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2281 K05387 - csv:101204862 1673.29