Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2285 ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCATCTCCGACACGGCTGAGCCCGAGAGGTATGACTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCCTTGATTTGCGTTCTCGGTCTTGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCATCTCGCCGGCGATGGGGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGAGATGAAATCCGGGTGCTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACGTGGTTTCGATCTCACTCTTCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCAGCGAGCTCGAGTTCGAACGGTGTGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGCTTTCTTAATCAAATTCATGTAATTACTACCGAAAATTGTGGATGTATTCAAGTTGTAAGCGAAGGCGATTCCCTTGAATTCGAAATCAGCCGTTCTGGTAGTTCTGTTTGTGTTGTGAATATTGACTTCAAATCTGTCGTCGATCTACAGCCGAGATGGCATAACTTTACAGTACAGGCGATGAATTCAAAAAGGGGAACAGTATCAGCATCATGTGGATGGTGGACATTGCAACTGCCAATGTGA 795 51.82 MRPFRYLAGVNSSAISDTAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGVTESRVKEEGDDKTNSFLNQIHVITTENCGCIQVVSEGDSLEFEISRSGSSVCVVNIDFKSVVDLQPRWHNFTVQAMNSKRGTVSASCGWWTLQLPM 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34539297 34540167 + CrPI670011_11g022850.1 Cre11g2285 514030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2285 264 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Cre11g2285 264 Pfam Ring finger domain 102 145 IPR001841 -
Cre11g2285 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
Cre11g2285 264 CDD RING-H2_EL5-like 102 145 - -
Cre11g2285 264 SUPERFAMILY RING/U-box 84 151 - -
Cre11g2285 264 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 173 IPR052788 -
Cre11g2285 264 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0275 Cre-Chr10:1659212 Cre11g2285 Cre-Chr11:34539297 1.40E-42 dispersed
Cre10g2373 Cre-Chr10:37820619 Cre11g2285 Cre-Chr11:34539297 6.20E-24 dispersed
Cre11g2285 Cre-Chr11:34539297 Cre02g0409 Cre-Chr2:1252658 8.60E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2285 - - - 0.0