Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre11g2294 | ATGTCGGGATCTGAGACCGGAGTGATTTCCAGCGGTGAACCCTTCACCATCGGTCTCCACAAGAATTCAGTACCGTCACAACAGCCGGTCATGCAGGGCATGCATTTACCCTTCGGCGCCGATGGCGTCTACAAGCCCGTTGCCGCCGCCTCTCCCACCTACCAGTCCTCCGCCGTCGGAGTTGCCGGTAATGCTGGCGCCGATGGATCTGCTCGTGAAGCTTTCGTTAACATGAATTCGCAAAGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTCGGAAGTATGGGCCAGATGGCAGTATGGCAATGGCTCCTGCAGTCCGCTCTCCCGCCGCAACTCAGTCCAGTGGAGGTTTTTCTCCTCCACCCACCGCCGCGCCTCCGTCGGGAGGATCAGCCACTCAAACTTCTTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTTCTAGCAAAAAGCAGCAGTTGGATGGCTCGGGGTCAGCAGGAGTTGGATTTACCCCACATGTCATCACCGTAAAAGCTGGAGAGGATGTATCTTCGAAAATAATGTCATTTTCACAGAATGGTCCTAGAGCTGTTTGTATCCTTACAGCAAATGGAGCAATATCCAATGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACCGTGACTTACGAGGGGCGATTCGAGATTTTGTCGCTATCTGGGTCCTATCTCCTCTCTGAGAATGGCAGCCAGCGGAGTCGAACTGGAGGTCTAAGTGTTTCATTATCTGGACCAGATGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCGTCTCCTGTACAGGTGGTCGTGGGGAGCTTCGTCACTGATGGGGTGCACAAGGAATTGAGACAAGTAAACCAAATAGAACAGTCTCCTGTTACTGCACCCCATAAACTTGCTCCAATCCGTGCTGGAATGACGGGAGCCAGCAGCCCGCCATCACGTGGGACTCTCAGTGAATCCTCAGGAGGGCCCGGGAGTCCGTTTAATCAGAGTGCTATAGCCTGCAATAATAACACCATATCTTGGAAGTGA | 1056 | 53.6 | MSGSETGVISSGEPFTIGLHKNSVPSQQPVMQGMHLPFGADGVYKPVAAASPTYQSSAVGVAGNAGADGSAREAFVNMNSQSEPVKRKRGRPRKYGPDGSMAMAPAVRSPAATQSSGGFSPPPTAAPPSGGSATQTSLKKARGRPPGSSSKKQQLDGSGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGSQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGVHKELRQVNQIEQSPVTAPHKLAPIRAGMTGASSPPSRGTLSESSGGPGSPFNQSAIACNNNTISWK | 351 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 34578089 | 34580718 | - | CrPI670011_11g022940.1 | Cre11g2294 | 514039 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre11g2294 | 351 | ProSiteProfiles | PPC domain profile profile. | 161 | 302 | IPR005175 | - | |
| Cre11g2294 | 351 | FunFam | AT-hook motif nuclear-localized protein 1-like | 167 | 298 | - | - | |
| Cre11g2294 | 351 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 50 | 335 | IPR039605 | GO:0003680(InterPro) | |
| Cre11g2294 | 351 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 165 | 289 | - | - | |
| Cre11g2294 | 351 | SMART | AT_hook_2 | 139 | 151 | IPR017956 | GO:0003677(InterPro) | |
| Cre11g2294 | 351 | SMART | AT_hook_2 | 86 | 98 | IPR017956 | GO:0003677(InterPro) | |
| Cre11g2294 | 351 | MobiDBLite | consensus disorder prediction | 317 | 351 | - | - | |
| Cre11g2294 | 351 | MobiDBLite | consensus disorder prediction | 129 | 160 | - | - | |
| Cre11g2294 | 351 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 167 | 281 | IPR005175 | - | |
| Cre11g2294 | 351 | CDD | DUF296 | 166 | 280 | IPR005175 | - | |
| Cre11g2294 | 351 | Gene3D | - | 167 | 300 | - | - | |
| Cre11g2294 | 351 | MobiDBLite | consensus disorder prediction | 77 | 165 | - | - | |
| Cre11g2294 | 351 | MobiDBLite | consensus disorder prediction | 310 | 351 | - | - | |
| Cre11g2294 | 351 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre08g0864 | Cre-Chr8:21782933 | Cre11g2294 | Cre-Chr11:34578089 | 1.30E-91 | dispersed | |
| Cre09g2170 | Cre-Chr9:40734516 | Cre11g2294 | Cre-Chr11:34578089 | 3.50E-52 | dispersed | |
| Cre10g0427 | Cre-Chr10:3144026 | Cre11g2294 | Cre-Chr11:34578089 | 1.90E-46 | dispersed | |
| Cre11g0545 | Cre-Chr11:2433570 | Cre11g2294 | Cre-Chr11:34578089 | 2.20E-48 | dispersed | |
| Cre11g2294 | Cre-Chr11:34578089 | Cre06g1146 | Cre-Chr6:5322030 | 2.20E-52 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre11g2294 | - | - | - | 0.0 |