Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2295 ATGGAGAAGGGGCCGACCACTGTTTCAGCAATGGAAGCGTTCGAGAAGCTGGAGAAGGTTGGAGAAGGAACTTACGGCAAAGTTTATAGGGCAAGGGAGAAGGCGACCGGCAAGATTGTGGCGCTCAAGAAGACGCGCCTCCATGAGGATGAGGAAGGTGTTCCTCCCACCACTCTCAGAGAGGTTTCAATTCTTCGAATGCTTTCTCGGGATCCCCATATTGTTAGGTTGATGGATGTCAAACAAGGCCAGAACAAGGAAGGGAAAACCGTCCTTTACTTGGTGTTTGAATACATGGATACTGATCTGAAGAAATTCATCAAGAGTTTCCGTCAAACGGGAGAAAACATTCCCGTTAACACTGTCAAGAGTTTGATGTACCAACTCTGTAAGGGCGTTGCCTTCTGCCATGGTCATGGAATCCTGCACAGGGACCTGAAACCACACAATCTCTTGATGGACCGAAAGACAATGATGCTCAAAATTGCAGACCTTGGGTTGGCTCGAGCATTTACTGTGCCAATTAAGAAGTATACTCATGAGATACTGACCCTCTGGTATAGAGCTCCCGAAGTTTTGTTGGGGGCAACTCATTACTCCACAGCTGTAGATATGTGGTCTGTTGCCTGCATATTCGCGGAACTTGCCACCAAGCAGGCTCTCTTTCCTGGAGACTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGAACCCCAAATGAAAAGATCTGGCCTGGTGTGAGCAAACTAATGAACTGGCATGAATATCCCCAGTGGAGCCCCCAAAGCCTTTCAACTGCTGTCCCCAACTTGGATGATAAAGGGCTAGATCTGCTTTCACAAATGTTGAGGTATGAACCTTCAACGCGTATTTCAGCAAAGAAAGCAATGGAACATCCTTATTTTGATGACTTGAACAAGGAATATCTCTGA 939 46.65 MEKGPTTVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIKSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVACIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKIWPGVSKLMNWHEYPQWSPQSLSTAVPNLDDKGLDLLSQMLRYEPSTRISAKKAMEHPYFDDLNKEYL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34586839 34588701 + CrPI670011_11g022950.1 Cre11g2295 514040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2295 312 SMART serkin_6 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2295 312 FunFam Cyclin-dependent kinase 2 102 311 - -
Cre11g2295 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2295 312 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Cre11g2295 312 PANTHER CELL DIVISION PROTEIN KINASE 14 304 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Cre11g2295 312 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Cre11g2295 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2295 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g2295 312 Gene3D Transferase(Phosphotransferase) domain 1 102 311 - -
Cre11g2295 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524(InterPro)
Cre11g2295 312 FunFam Cyclin-dependent kinase B2,2 10 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2295 K07760 - - csv:101208001 624.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0711 Cre-Chr4:25156602 Cre11g2295 Cre-Chr11:34586839 3.30E-121 dispersed
Cre07g1064 Cre-Chr7:15817390 Cre11g2295 Cre-Chr11:34586839 1.40E-20 dispersed
Cre08g1581 Cre-Chr8:28362151 Cre11g2295 Cre-Chr11:34586839 3.00E-35 dispersed
Cre10g0368 Cre-Chr10:2470685 Cre11g2295 Cre-Chr11:34586839 2.50E-51 dispersed
Cre10g1549 Cre-Chr10:29478548 Cre11g2295 Cre-Chr11:34586839 1.30E-43 dispersed
Cre11g1815 Cre-Chr11:29755793 Cre11g2295 Cre-Chr11:34586839 6.00E-70 dispersed
Cre11g2295 Cre-Chr11:34586839 Cre03g1910 Cre-Chr3:36136732 2.50E-47 dispersed
Cre11g2295 Cre-Chr11:34586839 Cre05g0708 Cre-Chr5:6258340 1.80E-50 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2344 . 1 291 Core Cell Cycle Gene Families AT3G48750 86.3 1.5e-150 529.3
Cre04g0711 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 1.0e-95 347.1
Cre11g2295 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.7e-93 338.6
Cre04g0711 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 5.1e-154 540.8
Cre11g2295 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 1.0e-117 420.2
Cre05g2344 . 1 293 Core Cell Cycle Gene Families AT3G54180 53.9 5.1e-93 338.2
Cre04g0711 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 2.9e-123 438.3
Cre11g2295 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 3.1e-93 338.6
Cre11g2295 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.5e-156 548.5
Cre04g0711 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 1.0e-117 420.2
Cre05g2344 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 1.0e-93 340.5
Cre11g2295 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.9e-160 560.8
Cre04g0711 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.8e-120 428.3
Cre05g2344 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.9e-97 351.3
Cre02g2717 . 57 571 Core Cell Cycle Gene Families AT5G10270 77.4 1.1e-219 759.6
Cre10g1554 . 23 484 Core Cell Cycle Gene Families AT5G10270 77.3 1.8e-209 725.7
Cre03g1910 . 840 1158 Core Cell Cycle Gene Families AT5G10270 51.6 1.1e-97 354.4
Cre05g1117 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.5e-97 353.2
Cre08g0070 . 137 453 Core Cell Cycle Gene Families AT5G10270 53.0 2.5e-97 353.2
Cre05g0708 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 4.2e-97 352.4
Cre03g0691 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.2 1.2e-96 350.9
Cre11g0557 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 4.7e-96 349.0
Cre02g2078 . 193 509 Core Cell Cycle Gene Families AT5G10270 52.6 4.0e-95 345.9
Cre02g1945 . 101 419 Core Cell Cycle Gene Families AT5G10270 50.4 2.2e-93 340.1
Cre01g1537 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.1 1.6e-91 334.0
Cre02g2077 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.6 2.0e-91 333.6
Cre02g2717 . 121 570 Core Cell Cycle Gene Families AT5G64960 72.5 4.9e-177 617.8
Cre10g1554 . 87 537 Core Cell Cycle Gene Families AT5G64960 71.5 5.6e-173 604.4
Cre02g2078 . 247 509 Core Cell Cycle Gene Families AT5G64960 53.6 1.3e-81 300.8
Cre05g1117 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.3e-81 300.1
Cre03g0691 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.9 5.1e-81 298.9
Cre03g1910 . 894 1158 Core Cell Cycle Gene Families AT5G64960 50.7 8.6e-81 298.1
Cre11g0557 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.1e-80 297.7
Cre08g0070 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.2 1.5e-80 297.4
Cre02g2077 . 182 444 Core Cell Cycle Gene Families AT5G64960 53.2 4.3e-80 295.8
Cre05g0708 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 4.3e-80 295.8
Cre06g2316 . 4 414 Core Cell Cycle Gene Families AT1G73690 74.0 4.1e-172 601.3
Cre06g2316 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.7 2.3e-155 545.4
Cre06g2316 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.5 4.3e-174 607.8
Cre04g0167 . 32 505 Core Cell Cycle Gene Families AT5G63610 74.8 4.7e-199 691.0
Cre11g0723 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.8 2.8e-175 612.1
Cre08g0548 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.6 2.5e-144 509.2
Cre09g0228 . 225 503 Core Cell Cycle Gene Families AT1G44110 55.2 1.5e-88 323.9
Cre05g1879 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.1 6.4e-84 308.5
Cre05g2222 . 124 403 Core Cell Cycle Gene Families AT1G44110 52.5 1.2e-82 304.3
Cre08g1567 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 1.8e-78 290.4
Cre08g1231 . 305 566 Core Cell Cycle Gene Families AT1G44110 53.4 3.2e-75 279.6
Cre09g0228 . 224 499 Core Cell Cycle Gene Families AT1G77390 51.4 3.3e-77 286.2
Cre05g1879 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.1 1.2e-74 277.7
Cre05g2222 . 129 401 Core Cell Cycle Gene Families AT1G77390 50.5 1.7e-73 273.9
Cre08g1231 . 305 562 Core Cell Cycle Gene Families AT1G77390 50.8 1.4e-67 254.2
Cre05g1879 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.9 5.3e-120 428.3
Cre08g1231 . 138 578 Core Cell Cycle Gene Families AT5G25380 51.0 1.0e-102 370.9
Cre09g0228 . 223 503 Core Cell Cycle Gene Families AT5G25380 63.7 6.1e-100 361.7
Cre08g0548 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.1 3.7e-81 299.3
Cre05g2222 . 128 396 Core Cell Cycle Gene Families AT5G25380 51.7 5.2e-75 278.9
Cre02g1013 . 119 343 Core Cell Cycle Gene Families AT5G25380 52.2 8.1e-60 228.4
Cre05g1879 . 3 422 Core Cell Cycle Gene Families AT5G11300 51.1 1.6e-94 343.6
Cre08g0548 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 2.0e-68 256.9
Cre05g2222 . 124 340 Core Cell Cycle Gene Families AT5G11300 55.3 8.1e-62 235.0
Cre08g1567 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.4e-60 229.6
Cre02g1013 . 119 285 Core Cell Cycle Gene Families AT5G11300 52.4 2.2e-43 173.7
Cre09g0228 . 189 503 Core Cell Cycle Gene Families AT1G15570 65.0 3.0e-118 422.5
Cre08g0548 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.1 2.2e-81 300.1
Cre02g1013 . 119 347 Core Cell Cycle Gene Families AT1G15570 51.3 9.1e-59 224.9
Cre09g0228 . 4 503 Core Cell Cycle Gene Families AT1G80370 51.4 4.7e-119 425.2
Cre08g0548 . 217 496 Core Cell Cycle Gene Families AT1G80370 55.7 1.0e-81 301.2
Cre05g2222 . 124 401 Core Cell Cycle Gene Families AT1G80370 51.4 9.9e-77 284.6
Cre08g1567 . 92 370 Core Cell Cycle Gene Families AT1G80370 52.0 2.4e-75 280.0
Cre02g1013 . 119 348 Core Cell Cycle Gene Families AT1G80370 51.9 3.5e-58 223.0
Cre08g1567 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.5 9.1e-115 410.6
Cre05g2222 . 30 406 Core Cell Cycle Gene Families AT5G43080 57.3 2.2e-113 406.0
Cre08g0548 . 218 498 Core Cell Cycle Gene Families AT5G43080 51.2 1.6e-79 293.5
Cre05g1879 . 208 477 Core Cell Cycle Gene Families AT5G43080 53.3 2.3e-78 289.7
Cre09g0228 . 226 503 Core Cell Cycle Gene Families AT5G43080 51.3 6.4e-76 281.6
Cre08g1567 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.4 6.7e-124 441.0
Cre05g2222 . 30 406 Core Cell Cycle Gene Families AT1G47210 54.8 3.7e-114 408.7
Cre09g0228 . 226 498 Core Cell Cycle Gene Families AT1G47210 51.8 8.0e-77 284.6
Cre05g1879 . 208 477 Core Cell Cycle Gene Families AT1G47210 51.8 5.2e-76 282.0
Cre08g1231 . 302 568 Core Cell Cycle Gene Families AT1G47210 50.2 7.2e-70 261.5
Cre05g2222 . 124 404 Core Cell Cycle Gene Families AT1G47220 59.1 1.3e-94 343.6
Cre08g1567 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 7.0e-93 337.8
Cre05g1879 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.3 2.6e-71 266.2
Cre05g2222 . 30 406 Core Cell Cycle Gene Families AT1G47230 57.1 1.8e-116 416.4
Cre08g1567 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.4 5.6e-115 411.4
Cre02g1013 . 66 351 Core Cell Cycle Gene Families AT1G47230 53.8 9.4e-78 287.7
Cre08g0548 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 1.0e-76 284.3
Cre09g0228 . 228 498 Core Cell Cycle Gene Families AT1G47230 52.0 1.4e-73 273.9
Cre05g1879 . 209 474 Core Cell Cycle Gene Families AT1G47230 51.7 1.0e-71 267.7
Cre04g0641 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 1.0e-115 414.1
Cre04g0641 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 7.5e-82 301.2
Cre02g2568 . 102 304 Core Cell Cycle Gene Families AT5G06150 63.2 5.4e-64 241.9
Cre04g1707 . 170 344 Core Cell Cycle Gene Families AT5G06150 54.3 1.1e-45 181.0
Cre04g0641 . 6 406 Core Cell Cycle Gene Families AT3G11520 57.6 4.2e-105 378.6
Cre04g1707 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.4 7.5e-62 235.0
Cre02g2568 . 14 411 Core Cell Cycle Gene Families AT2G26760 52.5 1.6e-107 386.7
Cre04g1707 . 8 440 Core Cell Cycle Gene Families AT2G17620 60.0 5.1e-128 454.9
Cre11g2261 . 153 552 Core Cell Cycle Gene Families AT2G17620 52.2 2.1e-105 379.8
Cre04g1707 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.7 2.3e-103 372.9
Cre11g2261 . 146 509 Core Cell Cycle Gene Families AT4G35620 53.4 6.5e-90 328.2
Cre02g2568 . 137 363 Core Cell Cycle Gene Families AT4G35620 50.9 4.4e-54 209.1
Cre11g2261 . 117 552 Core Cell Cycle Gene Families AT1G20610 63.1 9.7e-143 503.8
Cre04g1707 . 1 440 Core Cell Cycle Gene Families AT1G20610 57.0 1.5e-122 436.8
Cre11g2261 . 117 449 Core Cell Cycle Gene Families AT1G76310 63.5 1.2e-103 373.6
Cre04g1707 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.5 5.8e-82 301.6
Cre02g2568 . 133 300 Core Cell Cycle Gene Families AT1G76310 52.4 6.4e-41 165.2
Cre01g0408 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.3 1.0e-110 397.1
Cre05g2672 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.0 3.1e-104 375.6
Cre04g1465 . 41 335 Core Cell Cycle Gene Families AT2G22490 54.6 1.2e-82 303.9
Cre05g1199 . 57 339 Core Cell Cycle Gene Families AT4G34160 55.6 8.6e-79 291.2
Cre08g1559 . 47 322 Core Cell Cycle Gene Families AT4G34160 50.5 4.9e-66 248.8
Cre02g0981 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 2.8e-61 233.0
Cre05g2211 . 71 318 Core Cell Cycle Gene Families AT5G67260 51.4 2.2e-64 243.4
Cre04g1465 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.2e-69 260.4
Cre08g1092 . 98 297 Core Cell Cycle Gene Families AT5G65420 55.9 1.3e-60 230.3
Cre04g1465 . 54 233 Core Cell Cycle Gene Families AT5G10440 59.1 8.0e-56 214.2
Cre08g1092 . 93 271 Core Cell Cycle Gene Families AT5G10440 54.1 1.3e-50 196.8
Cre04g1278 . 90 358 Core Cell Cycle Gene Families AT5G27620 63.6 3.2e-92 335.5
Cre01g1204 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 8.0e-44 172.9
Cre02g2473 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.2e-42 169.1
Cre01g1204 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.5e-39 158.7
Cre02g2473 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 4.3e-39 157.1
Cre05g2865 . 684 1702 Core Cell Cycle Gene Families AT3G12280 72.0 0.0e+00 1416.0
Cre09g0578 . 2 486 Core Cell Cycle Gene Families AT1G02970 60.1 3.5e-160 562.0
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64583 PF00069 Pkinase 7.50E-71 CL0016 Cre PK