Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2301 ATGGAGGAGGATCTCCATTTCTCCGAATACGACTTAATAGGGCAGATTGATTGGAACGACTTCTTTGATGAATTCCCGGAGGTGGAGCTCCCTCTTGTCGGGGATTCAACATCGCCCCACGGATCTCCTGATTCCTTTTCTTCCTGGATCAACCACCTCGAAAACGCTTTATTGAATGACGATCAAGACAAGGGGGTTTCCCTTCCTACTCCTACCGATGATTGCTGCGATAGTTTTTTGGCTGACGTCCTCGTCGACTCTCATGGAGGAGCCTCTGTAATCGACCTCGATTCCAATCCTTCCGATTGCGGTAACCACTTTAGCAGTTCCCAGAAGGAGGATGGACATAAGGTTTCTCCCGCGCCTACTGACGATTCCTGTGGTAGTTTTATGGCTGAAGTACTTGTAGATACTCACGGGAGCTCCTCTGGGGTTGATGCTGTAGTTGACGTTCTGTCCAACGCTTCCGATTGCGGTGACGACTCGAACAATTCCCAGAAGGAGAAGATCGACGCAACAAACATCGACGATAGTGTAGGTGAAGATGTCGATGATTCGCTTTCTAAAAAGCGGAGAAGGCAGCTGAGAAATAGGGATGCCGCAGTAAGATCTAGGGAGAGGAAAAAGATGTACGTAAAGGATCTAGAGATGAAGAGTAAATTTCTTGAAGGTGAATGCCGGAGATTGGGGCGTTTGCTCCAGTGTTACTGTGCTGAGAATCAAGCCTTACGGTTTAGTCTACAGATGGGAGGCGCTTCTGGTGCTTCACTGACCAAGCAGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGTTGGGTTCCCTGCTTTGCCCTTACAAGTTACAACCTTCCCTCCTCGCTCACTCTTCACTCTTCTCCTTCATCCTGCATCCTGCATCCGCCATGGACTCCGATTACGGCATTCCCCGTCAACTCTCCGATCTTCAGAAAATCCGCTCTCTCTACCAACCCGACCTCCCTCCTTGTCTCCAGGGAACAGCGGTCAGGGTTGAATTTGGAGATGGCACTACAGCTGTGGATCCTGCTGATGCCCCCACCATTAGTCGGGCCTTTCCCCACACTTACGGTCAACCATTGGCTCACTTTCTCAGGGCAACTGCTAAAGTCCCCGATGCTCAAATTATTACTGTACATCCAGCCATCCGGGTGGGAATAGTTTTTTGTGGAAGGCAATCCCCTGGAGGCCATAACGTCATATGGGGGCTTCATAATGCTCTCAAAGTCCACAACCCAAATAGTATATTGTTTGGATTTCTTGGTGGCTCTGAAGGTTTGTTTTCCCAGAAAACTCTTGAGGTTACCGATGACATTCTTTCAACGTACAAAAATCAAGGTGGTTATGATTTATTGGGACGGACCAAGGATCAAATTCGAACTAAAGAGCAGGTTAATGCTGCACTTAAGACATGCTTAGATTTGAAACTGGATGGTCTTGTCATAATTGGCGGAGTGACGTCAAACACTGATGCTGCTCAACTTGCCGAAACCTTTGCTGAAGCTAAATGCCCCACGAAGGTTGTAGGAGTTCCTGTTACTTTGAATGGCGATCTCAAGAATCAGTTTGTTGAAACAAATGTTGGTTTTGACACTATATGCAAGGTCAATTCTCAGCTAATCAGCAATGTATGCACTGATGCCCTATCTGCAGAGAAGTATTACTATTTCATTCGACTCATGGGCCGGAAAGCATCCCATGTTGCTTTGGAGTGCACTCTTCAATCTCATCCAAATTTGGTTATTCTTGGTGAGGAGGTGGCTGCATCAAAGCTTACTCTTTTTGATTTGACGACACAGATATGTGATGCTGTTCAGGCTAGAGCACAACAAGACAAATACCATGGGGTCATCTTACTGCCCGAAGGGCTCATTGAAAGTATTCCTGAAATCTATGCCCTTTTGAAGGAAATTCACAGTCTACTTAAGCAAGGAGTTCTGATTGATAATATTTCTTCCCAACTCTCTCCTTGGGCATCAGCGCTATTTGAATTTCTGCCACCTTTCATCAGGAAGCAGTTGCTACTTCATCCTGAATCCGATGACTCTGCTCAGTTATCTCAGATTGAGACGGAGAAACTTTTGGCACATCTTGTGGAGGCTGAAATTAACAAGCGTCTGAAAGAAGGGACTTACAAGGGGAAGAAATTCAATGCAATTTGCCACTTCTTTGGTTACCAGGCTCGGGGATCTTTACCTTCAAAATTTGATTGTGACTATGCCTACGTTCTTGGGCATGTTTGCTACCATATCTTAGCTGCTGGCTTGAACGGTTACATGGCTACTTTAACTAACCTGAAAAATCCTGTGAACAAATGGCGCTGTGGTGCTGCCCCGATTGCAGCCATGATGACTGTGAAGCGTTGGGCTCAAAATCCTGGGGCGTTGTCCATTGGGAAACCTGCAATTCACCCAGCAACTGTGGATTTGAAAGGGAAAGCATACGAGTTATTGAGACAAAATGCGAGTCAGTTTCTTATGGACGATCTGTATAGAAACCCTGGACCTCTTCAGTTTGACGGTCCTGGTGCTGATGCTAAGCCCGTCTCCCTGTGCGTTGAGGACCAGGATTACATGGGCCGCATCAAGAAGCTACAGGAATATCTTGACAAGGTCCGAACAATAGTAAAACCAGGGTGTTCGCAGGAGGTTCTTAAAGCAGCATTAAGCGTCATGGCATCCGTGACTGATGTTCTCTCGGTTATGTCTTCGAGTTCATTCAGCGGAAAGGCATCATTAGAAGGATAA 2763 46.62 MEEDLHFSEYDLIGQIDWNDFFDEFPEVELPLVGDSTSPHGSPDSFSSWINHLENALLNDDQDKGVSLPTPTDDCCDSFLADVLVDSHGGASVIDLDSNPSDCGNHFSSSQKEDGHKVSPAPTDDSCGSFMAEVLVDTHGSSSGVDAVVDVLSNASDCGDDSNNSQKEKIDATNIDDSVGEDVDDSLSKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSKFLEGECRRLGRLLQCYCAENQALRFSLQMGGASGASLTKQESAVLLLESLLLGSLLCPYKLQPSLLAHSSLFSFILHPASAMDSDYGIPRQLSDLQKIRSLYQPDLPPCLQGTAVRVEFGDGTTAVDPADAPTISRAFPHTYGQPLAHFLRATAKVPDAQIITVHPAIRVGIVFCGRQSPGGHNVIWGLHNALKVHNPNSILFGFLGGSEGLFSQKTLEVTDDILSTYKNQGGYDLLGRTKDQIRTKEQVNAALKTCLDLKLDGLVIIGGVTSNTDAAQLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNLVILGEEVAASKLTLFDLTTQICDAVQARAQQDKYHGVILLPEGLIESIPEIYALLKEIHSLLKQGVLIDNISSQLSPWASALFEFLPPFIRKQLLLHPESDDSAQLSQIETEKLLAHLVEAEINKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHILAAGLNGYMATLTNLKNPVNKWRCGAAPIAAMMTVKRWAQNPGALSIGKPAIHPATVDLKGKAYELLRQNASQFLMDDLYRNPGPLQFDGPGADAKPVSLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSVMASVTDVLSVMSSSSFSGKASLEG 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34618518 34628147 - CrPI670011_11g023010.1 Cre11g2301 514046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2301 920 CDD bZIP_HY5-like 190 241 - -
Cre11g2301 920 MobiDBLite consensus disorder prediction 162 192 - -
Cre11g2301 920 NCBIfam diphosphate--fructose-6-phosphate 1-phosphotransferase 315 859 IPR011183 GO:0005524(InterPro)|GO:0006096(InterPro)|GO:0047334(InterPro)
Cre11g2301 920 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 311 910 - GO:0005829(PANTHER)|GO:0008443(PANTHER)|GO:0009749(PANTHER)|GO:0015979(PANTHER)|GO:0047334(PANTHER)
Cre11g2301 920 SUPERFAMILY Phosphofructokinase 313 858 IPR035966 GO:0003872(InterPro)|GO:0006096(InterPro)
Cre11g2301 920 Gene3D Phosphofructokinase domain 535 848 IPR035966 GO:0003872(InterPro)|GO:0006096(InterPro)
Cre11g2301 920 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 244 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g2301 920 Gene3D Phosphofructokinase; domain 3 633 697 - -
Cre11g2301 920 FunFam Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 633 697 - -
Cre11g2301 920 Pfam bZIP transcription factor 188 237 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g2301 920 SMART brlzneu 184 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g2301 920 Pfam Phosphofructokinase 389 755 IPR000023 GO:0003872(InterPro)|GO:0006096(InterPro)
Cre11g2301 920 MobiDBLite consensus disorder prediction 96 124 - -
Cre11g2301 920 MobiDBLite consensus disorder prediction 156 203 - -
Cre11g2301 920 Hamap Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 311 862 IPR011183 GO:0005524(InterPro)|GO:0006096(InterPro)|GO:0047334(InterPro)
Cre11g2301 920 Gene3D - 319 813 - -
Cre11g2301 920 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 192 207 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g2301 920 SUPERFAMILY Leucine zipper domain 189 245 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g2301 920 Gene3D - 188 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2301 K00895 - - csv:101208728 1171.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1782 Cre-Chr4:35760633 Cre11g2301 Cre-Chr11:34618518 2.30E-108 dispersed
Cre05g1466 Cre-Chr5:18579234 Cre11g2301 Cre-Chr11:34618518 2.90E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g32 Blo01g01654 Blo12g00839 . . Bpe02g00289 . Bma04g00305 Bma01g02425 . . . Cma09g00015 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02428 Csa04g02744 . . . . . . . . . . . . Cmo09g00014 . . . Car09g00014 . . . . . . . . . Cla11g01858 Cam11g1925 Cec11g1952 Cco11g1964 Clacu11g2090 Cmu11g1893 Cre11g2301 . . Chy07g00432 Cme07g00018
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003456 2 1 2 2 2 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 7 4 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54750 PF00365 PFK 3.10E-29 CL0240 Cre TF