Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2304 ATGCGTTTTCGCTCAGTGATCACTCCATTATCAGGGATGGCAATGGCGCTAGTTCAGCCACACACTTCAGCTTCTGCAATTTCGTCTTCCTCCGCCTCATTCTACAGAAGTTCTTTTCAGCAACTCCGTTCGCGGACCACGACCCTTGATCTTCGAAACAGCCACTCCATCCCTCATCGTTCCACTTGCAGAGCTTCCTGGCAGGAGCTTGCAGGGGTTCTAATATTCTCTGCAATTCCTTTCACGGCGGTGAAAGCCATCGCCAATAGTCCACTTGGAGAGTCGCTCCAGAGACAATTGCAAAAGAAGAAAAAAGCTGCCGTAGCCAACTCTTCGAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGCTCATGGTATGGAGAAGGGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTTCAGAAGTACTTCAACTTTGAAATACTGCATGCCCGTTGGGCTATGTTAGCATCCCTTGGAGCTTTAGTTCCAGAAATCTTAGATATTTTTGGAGCTTTTCATTTTACTGAACCCATCTGGTGGCGAGTGGGATATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCATTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCTATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATTGAGGCATTGGAGCCTCTGGGAATATATTTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGACCCCTTGAATCTGTCCAAGGATGCTGCAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGTGTCGTCAAATCTGTATGGTGTTCATAACTCATAA 1002 45.61 MRFRSVITPLSGMAMALVQPHTSASAISSSSASFYRSSFQQLRSRTTTLDLRNSHSIPHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQLQKKKKAAVANSSKFKALAEEARKDSSWYGEGRPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTVSSNLYGVHNS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34640981 34650975 + CrPI670011_11g023040.1 Cre11g2304 514049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2304 333 FunFam Chlorophyll a-b binding protein, chloroplastic 134 331 - -
Cre11g2304 333 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 81 324 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cre11g2304 333 Pfam Chlorophyll A-B binding protein 144 319 IPR022796 -
Cre11g2304 333 Gene3D Chlorophyll a/b binding protein domain 134 332 - -
Cre11g2304 333 SUPERFAMILY Chlorophyll a-b binding protein 126 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1333 Cre-Chr10:26855449 Cre11g2304 Cre-Chr11:34640981 4.20E-40 dispersed
Cre11g1792 Cre-Chr11:29505023 Cre11g2304 Cre-Chr11:34640981 4.00E-22 dispersed
Cre11g2304 Cre-Chr11:34640981 Cre02g2152 Cre-Chr2:35092041 4.70E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2304 K14172 - csv:101209460 556.984