Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2308 ATGCTCCATCTTCTTCTTCTGCCATTCATTCTTTTAGCATCTTCTTCGGCCGTTAACACCAAGCCCGGATGCCCTTCCAACTGTGGAAACGTCTCCGTTCCCTATCCTTTCGGCATCGGCGTTGGTTGTTACATGGCCACCGGGTTTGACATAACTTGCAATTCTTCGTATGATCCTCCATTACCTTTCCTAGGTACTGGTAACCTTCAAGTTGTGGAAATTTCTCTAACTAATCTCCGCATACGCAACTTTGTTTCTTTCAATTGCTACACCCAAACTGGTGCTCTCTCCCAGAGATCCAGCTCCTGGATCAACTTGGGCCGCCTCCCTATGTTCTTCTCCACCACCAACAAGTTCACCGTCATCGGCTGCGACACCCTGGCTTTGATCAGTGGCTCCGAGGGGCTCTCCTACACCAGTGGATGCGTCTCCATCTGCTCCAGCAAGGAAAGCGTGATCAATGGCTCTTGTTCTGGCATCGGGTGTTGCCAGACTGCCGTCCCCAGAGGCCTAAAGCGCTTCCAGAGCATGATTGGGAACCTCAACAACCACACCAAAACCTGGCAGTACAATCCTTGCAGTTACGCCTTCCTGGTTGACCAAGATCGCTACAACTTCGAGGTGTCTGATCTGGCGGATCCCAACTTTCTAGCCACCATTCAAAGCTTGCCAGTGGTTTTGGATTGGGTGGTGGGTAACCTGACATGTGAAGAGGCTCGGAAAGGCTTCTCAACCTACGTTTGTCAAGCCAATTCCGAATGCTATGATTCAGAGAGTGGAAGCGGTTATCAATGTGGTTGCAGCCCAGGTTTCAGGGGGAACCCATATCTCAGTTCTGGATGCCAAGACATTGACGAGTGTGCAGGCCCCAGCAACCCTTGCGAGGGCATATGCGTGAATACCCCTGGCAGTTATTACTGCTCATGTCCCCACGGTTCTTATGGTGATGGTAAGAAGGACGGCAAGGGCTGCATTACCAAAACCAAGCAATTTCCACTTATTCAACTCTCTCTTGGTCTTGGCTCCACTCTTCTCTTCCTTATCGTCACAGCCACTTGGCTTTACTTCACCATCAAGAAGAGGAATCTCATTAAACTTAGAGAGAAATTCTTCCAACAAAACGGAGGATTCTTATTGCGCCAGCAGTTATCCCAACACCAAGCTGCCGTTGACTCCACAAAAATCTTCACGGCAGAGGAGCTGGAGAAAGCGACCGACAATTATGCTGAGACCCGAATTTTGGGCAAAGGCGGAAACGGGACTGTGTACAAAGGAATTCTGCCAGACGGCAAAATAGTGGCCATTAAGAAGTCCAAGATAGCAGATGAAAGCCAAATTGAACAATTCATCAATGAAGTCATAATTCTGGTCCAAATCAACCACAGAAATGTGGTGAAGCTCTTGGGATGCTGCCTAGAGACGGAGGTTCCTCTGCTTGTCTACGAATTCGTGTCCAATGGGACTCTACATGCCCATATTCATGACAACAACAGCTTTAATAGTAATTCTCTGTCTTGGGAAAACCGGTTGAGAATAGCGACGGAAACGGCTGCAGCTCTTTCCTACCTGCACTCTGCAGCGTCCACACCCATCATTCACAGAGACGTGAAGTCGGCGAACATATTGTTGGACAACAAATGCACTGCAAAAGTAGCCGATTTTGGAGCATCCAAGTTTATCCCAATGGATCAGTCGCAGATCACGACGTTGGTTCAAGGGACGTTTGGTTACTTAGACCCGGAGTATTTCCAAACGAGTCAATTGACGGAGAAGAGCGACGTGTACAGCTTTGGGGTGGTACTGTTAGAGTTGTTGACGGGAGAGTTGCCAGTGTCGTTCGAGAGATCGGAATCCCAGAGAAACCTGTCGTCGTATTTTGTAGCGTCGTTGCGTGAGAAGAGGTTGTTTAGGATACTGGAGGGGAGAGTGCTGAGGGAGGGAAAGAGAGAGCAACTGATAGCAGCAGCGGAGCTAGCCAGGAGATGCTTGAAGCTGAAGGGGGAAGACAGGCCCAGAATGAGAGAAGTGGTGTCGGAGTTAGAACGGTTGAGAAGGGAAGGTGAAGGTGAAGGTGAAGGTGTAAATGAGGAAGAGACACAAACTTTGTTGGAACCACAACAACAACAACATGCCTTAAACTCACTGGATTTGTACCCCATTTCCACTTCTACTTTTCAAGCCGCCCATGTCTACAATTACGAAGCATTCGTATCCGAGTCTAGTTCTTCCCAATACCAATACGACGTCGGATCCTCCTCCTCCACATCCCATCTCGTCCATTCATTCCACCTCTCGCGATGA 2301 48.89 MLHLLLLPFILLASSSAVNTKPGCPSNCGNVSVPYPFGIGVGCYMATGFDITCNSSYDPPLPFLGTGNLQVVEISLTNLRIRNFVSFNCYTQTGALSQRSSSWINLGRLPMFFSTTNKFTVIGCDTLALISGSEGLSYTSGCVSICSSKESVINGSCSGIGCCQTAVPRGLKRFQSMIGNLNNHTKTWQYNPCSYAFLVDQDRYNFEVSDLADPNFLATIQSLPVVLDWVVGNLTCEEARKGFSTYVCQANSECYDSESGSGYQCGCSPGFRGNPYLSSGCQDIDECAGPSNPCEGICVNTPGSYYCSCPHGSYGDGKKDGKGCITKTKQFPLIQLSLGLGSTLLFLIVTATWLYFTIKKRNLIKLREKFFQQNGGFLLRQQLSQHQAAVDSTKIFTAEELEKATDNYAETRILGKGGNGTVYKGILPDGKIVAIKKSKIADESQIEQFINEVIILVQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLHAHIHDNNSFNSNSLSWENRLRIATETAAALSYLHSAASTPIIHRDVKSANILLDNKCTAKVADFGASKFIPMDQSQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLLELLTGELPVSFERSESQRNLSSYFVASLREKRLFRILEGRVLREGKREQLIAAAELARRCLKLKGEDRPRMREVVSELERLRREGEGEGEGVNEEETQTLLEPQQQQHALNSLDLYPISTSTFQAAHVYNYEAFVSESSSSQYQYDVGSSSSTSHLVHSFHLSR 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34672809 34675261 + CrPI670011_11g023080.1 Cre11g2308 514053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2308 766 Gene3D Phosphorylase Kinase; domain 1 382 483 - -
Cre11g2308 766 Pfam Wall-associated receptor kinase galacturonan-binding 24 81 IPR025287 GO:0030247(InterPro)
Cre11g2308 766 Gene3D Laminin 234 285 - -
Cre11g2308 766 SUPERFAMILY EGF/Laminin 281 325 - -
Cre11g2308 766 Gene3D Transferase(Phosphotransferase) domain 1 484 707 - -
Cre11g2308 766 ProSitePatterns Protein kinases ATP-binding region signature. 414 437 IPR017441 GO:0005524(InterPro)
Cre11g2308 766 ProSitePatterns Calcium-binding EGF-like domain signature. 283 307 IPR018097 GO:0005509(InterPro)
Cre11g2308 766 FunFam Wall-associated receptor kinase 2 234 281 - -
Cre11g2308 766 SMART egfca_6 283 325 IPR001881 GO:0005509(InterPro)
Cre11g2308 766 ProSiteProfiles EGF-like domain profile. 283 316 IPR000742 -
Cre11g2308 766 SMART serkin_6 408 683 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2308 766 FunFam Wall-associated receptor kinase 2 484 702 - -
Cre11g2308 766 SUPERFAMILY Protein kinase-like (PK-like) 387 681 IPR011009 -
Cre11g2308 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g2308 766 FunFam Wall-associated receptor kinase 2 378 483 - -
Cre11g2308 766 Gene3D Laminin 286 326 - -
Cre11g2308 766 Pfam Wall-associated kinase 155 231 IPR013695 GO:0004674(InterPro)|GO:0016020(InterPro)
Cre11g2308 766 ProSiteProfiles Protein kinase domain profile. 408 683 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2308 766 CDD STKc_IRAK 414 677 - -
Cre11g2308 766 SMART egf_5 235 282 IPR000742 -
Cre11g2308 766 SMART egf_5 286 325 IPR000742 -
Cre11g2308 766 FunFam Fibrillin 2 282 320 - -
Cre11g2308 766 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 298 309 IPR000152 -
Cre11g2308 766 CDD EGF_CA 283 316 - -
Cre11g2308 766 Pfam Protein kinase domain 408 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g2308 766 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 699 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Cre11g2308 766 Pfam Calcium-binding EGF domain 283 324 IPR049883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0577 Cre-Chr8:18638940 Cre11g2308 Cre-Chr11:34672809 5.10E-178 dispersed
Cre08g0578 Cre-Chr8:18659989 Cre11g2308 Cre-Chr11:34672809 4.30E-70 dispersed
Cre11g1222 Cre-Chr11:10355866 Cre11g2308 Cre-Chr11:34672809 1.10E-61 dispersed
Cre11g2308 Cre-Chr11:34672809 Cre07g1925 Cre-Chr7:34700181 2.20E-57 dispersed
Cre06g0998 Cre-Chr6:3524619 Cre11g2308 Cre-Chr11:34672809 2.60E-35 transposed
Cre11g1337 Cre-Chr11:14037115 Cre11g2308 Cre-Chr11:34672809 1.10E-118 transposed
Cre11g1338 Cre-Chr11:14062992 Cre11g2308 Cre-Chr11:34672809 2.40E-62 transposed
Cre11g2308 Cre-Chr11:34672809 Cre08g0940 Cre-Chr8:22594997 1.30E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64584 PF00069 Pkinase 1.70E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2308 - - - 0.0