Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2310 ATGAGAGGGCGAGATCGGCACGTGGAGGGGCGACAACCAGCAACGGGCAACCTCGTTAAGTATGCAAGCCAGAGTCGTATGGGGATGGAGTGGCCCATTGAATTCAAACAAATATGTAGCGGCGCAGCCAAAGAAGAGGTTGCGGTAGAAAAAGAACACGAAGGAGAATCGGAGACCCCTCGTGTTACAGCAAGACAATTGCAAGAAGCAGTTGATGCTCATCCAGATGACCCCTCATCCCATTTCAAACTCGGGATTTTCATGTGGGAAAATGGAGGAAGTCACGATAAGGCGGCTGCCGCGGACCATTTTCTCAAATCAGCGAAACTAGACCCTGGAAATGCTGCCGCTTTCAAATATCTTGGACATTATTACGCCACATTTTCTGTCGACATCGAAAGGGCTCTCAAGTGCTACCAGAGAGCTGTCAGTCTGGATGTCGACGATTTCCACTCTGGAGAAGCCTTGTGCGATCTGTTGCATCACCAAGGAAAGGAGAGTTTAGAGGTTGCTGTATGCGGAGAGGCTTCCTCTAAGTCACCCAGGGCCTTCTGGGCTTTCCGGAGGTTGGGCTATTTGCAGGTTTATCAAAAGAAATGGACTGAAGCTGTCTTAAGTCTTCAGCATGCCATTCGAGGATATCCTCATTGTGCTGATTTGTGGGAAGCCCTGGGTCTTGCATATCAACGGCTTGGTAGGTTTACTGCTGCAATTAAGTCTTATGCACGAGCCATTGAAATTGAAGGAGATAGAATTCTTGCTTGGGTTGAGAGTGGAAACATCTTCTTGATGCTTGGTTTGTTAAAAAAAGGAGTTGAACACTTTCGGCAAGCTCTAGAGATATCACCTAAAAGTATTACTGCACAATTTGGGCTCTCTTCAGGGCTTCTTGGTTTGGCAAAGGAATACATTAATAGGGGGGCATTTAAGTGGGCATCCTTCCTATTAGAGGAAGCATCTAAAGTTGCAAGAGGAAGTACTCATTTAGCTGCAAACTCATCGTGTATCTGGAAGTTGCTTGGAGATATTCAGCACACATATGCAAAATGTTATCCATGGATGGAAGAGGACTGGGGACAATGCTCAGAATCCTTTAGAACTTCTATCCTTTCCTGGAAGCAGACCCGCAGTTTGGCTTTATTTTCTGCCAAATGTTCCTATCAGCAAGCCCTGCACTTGGCTCCGTGGGAAGCTAACATTTACACAGATATTGCTATTACTTTAGATATTATTTCATCTTTGAATGACGATTCTGGATTTGGATTCAATTCCTGGCAGATATCTGAAAAGATGACATTAGGGGCCTTGATGCTCGAGGGTGACAATCATGAATTTTGGGTGGCAATGGGATGCATCTCTAACCATGATGCGTTGAAGCAACATGCTTTTATAAGGGCATTGCAGTTAGATGGATCTCTGGCTGGAGCCTGGGCTTATCTTGGGAAGTTATACTGGAATAGGGGCGAGAAGCAATTAGCAAGACAGGCTTTTGATTATGCTAGAAGTATAGATCCTTCTCTAGCATTACCCTGGGCTGGCATGTCGGCTGATTTGAACATTAGGGAGTCTTCATCAGATGAAGCATTTGAGAGCTGTTTGAGAGCTGCACAAATACTACCCGTGGCGGAATTCCAAATTGGTCTTGCCAAGCTTTCTCTGCATGCAGGCCATCTTTCATCTCCACAGGTGTTCGGAGCCATACGTCAGGCTGTTCAACTTGCACCTTGTTACCCCGAATCCTATAATCTCAATGGACTAGCTTTTGAGGCACAATTAGATTATCAATCTGCTGTTGCTGCTTATCGTTTAGCACACCTCACAATTAGCCATTTTTCAGATAGAGTTCCAAGGTCTCATGTCAGAGATATATCAATCAACTTAGCCAGATCACTCTGCATGGTTGGAAATTTCTTTGAAGCTTTGCAGGAATGTGAAAATTTGAGTAAAGAAGGCATGCTCGACATTGAAGGTTTGCAGGTTTATGCATTCTCTCTATGGAAGCTAGGAAAGAATGACGAGGCTCTTAGCACTGTGAGAACACTTGCTTCTGGTATCTCTGCCATGGAAAGCACACGTATGGCTGCGTCTGTTGGTTTCATATGCAGACTGTTGTGTTCAATATCTGGACTGGATTCCACAATTAACAGTATCATGAAGATGCCAGCCAATTTCTTCCAGAGTTCAAAAATGAGCTTTGTAGTGGCTGCTGTTCATGCTCTTGATAGTTGTGAGCGGCTTGAGTCCATTGTTTTAAGCAGTCGTTCCTGCCTCCAATCTCATGAAGAGATTACTAGAATGCACATTTTGATTACTCTTTCTAAGCTGATCAAATATCGAACAAATAACTGCCTGGGATTTCTCAATGGAGTGATGCATCTTAGAAAAGCTCTTCATGCATACCCCAACAGTAATTTGATCAGTTGTGAAACAGTCTTATCCTACAAAGAGGAAAAAAAAAGCAGTTGCGAAACAGGTTTTGGCTTGAAAATTGAGAATTTGCTAAAGGTGGAAAAGCCAATGGGAAAGAGGACAGAGGAGAAACCAAGGGAGAGAGACACGGAATTAAACTTGTTAAGTACTGCCACTGGAAGTCCAGCAAATAAACTTCTCTTCTTGGTTGGATATTTGCTATTGCAATCCTACTTCGGAAAAGTATGGAACTTGCTTGGTTATCTGTTGCTATCCAACGAAGAAGGGGATGACAATCACATAGCTACTAGGTGCTGCAACATGTTTTATGGTTTTGACCAACAGAACAAAGGTCTGAAATCTGCATATGAAATTCATGGTGCTGGAGCTGTGGCCTGCTATACAATTGGCACGAGTCATCCGAGGTTTTCTTTTCCAACATGTTCATACCAGTGCCAGAATGGAATTGGGACCATCCGACAACTTCAAAAATGCTTGCGTCAAGAGCCATGGAATTGTGATGTTCAATATCTTCTTATACTAAACATTCTGCAGAAGGCACGTGAAGAAAGATTTCCCTGTCATCTACGTGCAACTATTGAGCGGCTAATCTTGGTTGCCTTCTCCAATGAACCATATTTTGAGAAAGATACATCTCATCATTATAAAAAGTTTCAGCTTCTACTTTGTGCATCTGAGATCAGTTTGCAAGGCGGTGGCCAAATTAAATGCATCAACTATGCCAAAGCTGCTTCCTCTATTTCACTTCCTGAAATGTATCTTTTTTATGCACACTTGTTACTGTGCCGAGCCTATGCTGCAGAAAATGATTCTAACAACCTCCGTAAAGAGTTCATAAAATGTTTGGATTTAAAGACAGATAACTATCTTGGATGGGTATGCCTTAAATTCATTGCATCTGGATATGAGCTTCATGATGAATCCAATATATTAGAACTTAGTTTCAAGAACTGCTCATTAGAGAGCAAGAATCTGCAACACATGGTAATACCTATGTCTAGTCTGGTCGATGGTTTGATATCTTTTAGGAGCCAGGATTTTATGGCTGCTGAGAAGTATTTTGCACAAGCTTGTTCTTTGGGACACGGTGATGGCTGTCTCCTCCTCTGTCATGGTGTAACCTGCATGGAACTTGCAAAGCAGCTTTGCAGTTCTCATTTCTTGAGGCTGGCTGTGAACAGTCTTCTTAAAGCTCAAGTAATTTCTGTTGTTCCAATACCAATTGTCTCGATCACACTGGCACAAGCAGAAGGGAGTCTTGGTCTGAAAGAAAATTGGGAGTCAGGCCTTCGTTTTGAATGGTTCTCGTGGCCACCAGATATGAGGCCTGCGGAGCTCTTATTTCAAATGCATCTACTTGCAAAACAGTCAAAAGTTGGTTCTGATCAATTGAGGGTTGAGTTGTGTCAGTCTCCGCTGAGATGGGTTCTTCGTGCAATTCATGTAAACCCTTCTTGCATGAGATATTGGAAGGTGGTGCAAAGCTTGTGGAATGAGGGCTGA 3933 43.2 MRGRDRHVEGRQPATGNLVKYASQSRMGMEWPIEFKQICSGAAKEEVAVEKEHEGESETPRVTARQLQEAVDAHPDDPSSHFKLGIFMWENGGSHDKAAAADHFLKSAKLDPGNAAAFKYLGHYYATFSVDIERALKCYQRAVSLDVDDFHSGEALCDLLHHQGKESLEVAVCGEASSKSPRAFWAFRRLGYLQVYQKKWTEAVLSLQHAIRGYPHCADLWEALGLAYQRLGRFTAAIKSYARAIEIEGDRILAWVESGNIFLMLGLLKKGVEHFRQALEISPKSITAQFGLSSGLLGLAKEYINRGAFKWASFLLEEASKVARGSTHLAANSSCIWKLLGDIQHTYAKCYPWMEEDWGQCSESFRTSILSWKQTRSLALFSAKCSYQQALHLAPWEANIYTDIAITLDIISSLNDDSGFGFNSWQISEKMTLGALMLEGDNHEFWVAMGCISNHDALKQHAFIRALQLDGSLAGAWAYLGKLYWNRGEKQLARQAFDYARSIDPSLALPWAGMSADLNIRESSSDEAFESCLRAAQILPVAEFQIGLAKLSLHAGHLSSPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRLAHLTISHFSDRVPRSHVRDISINLARSLCMVGNFFEALQECENLSKEGMLDIEGLQVYAFSLWKLGKNDEALSTVRTLASGISAMESTRMAASVGFICRLLCSISGLDSTINSIMKMPANFFQSSKMSFVVAAVHALDSCERLESIVLSSRSCLQSHEEITRMHILITLSKLIKYRTNNCLGFLNGVMHLRKALHAYPNSNLISCETVLSYKEEKKSSCETGFGLKIENLLKVEKPMGKRTEEKPRERDTELNLLSTATGSPANKLLFLVGYLLLQSYFGKVWNLLGYLLLSNEEGDDNHIATRCCNMFYGFDQQNKGLKSAYEIHGAGAVACYTIGTSHPRFSFPTCSYQCQNGIGTIRQLQKCLRQEPWNCDVQYLLILNILQKAREERFPCHLRATIERLILVAFSNEPYFEKDTSHHYKKFQLLLCASEISLQGGGQIKCINYAKAASSISLPEMYLFYAHLLLCRAYAAENDSNNLRKEFIKCLDLKTDNYLGWVCLKFIASGYELHDESNILELSFKNCSLESKNLQHMVIPMSSLVDGLISFRSQDFMAAEKYFAQACSLGHGDGCLLLCHGVTCMELAKQLCSSHFLRLAVNSLLKAQVISVVPIPIVSITLAQAEGSLGLKENWESGLRFEWFSWPPDMRPAELLFQMHLLAKQSKVGSDQLRVELCQSPLRWVLRAIHVNPSCMRYWKVVQSLWNEG 1310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34687897 34707847 + CrPI670011_11g023100.1 Cre11g2310 514055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2310 1310 Pfam Tetratricopeptide repeat 189 246 - -
Cre11g2310 1310 Gene3D Tetratricopeptide repeat domain 63 128 IPR011990 GO:0005515(InterPro)
Cre11g2310 1310 ProSiteProfiles TPR repeat profile. 474 507 IPR019734 GO:0005515(InterPro)
Cre11g2310 1310 ProSiteProfiles TPR repeat profile. 218 251 IPR019734 GO:0005515(InterPro)
Cre11g2310 1310 PANTHER SUPERKILLER 3 PROTEIN-RELATED 43 806 IPR039226 GO:0006401(InterPro)|GO:0034427(PANTHER)|GO:0055087(PANTHER)|GO:0055087(InterPro)
Cre11g2310 1310 SUPERFAMILY TPR-like 568 679 IPR011990 GO:0005515(InterPro)
Cre11g2310 1310 SUPERFAMILY TPR-like 181 604 IPR011990 GO:0005515(InterPro)
Cre11g2310 1310 ProSiteProfiles Rhodanese domain profile. 142 209 IPR001763 -
Cre11g2310 1310 ProSiteProfiles TPR repeat region circular profile. 218 248 - -
Cre11g2310 1310 ProSiteProfiles TPR repeat profile. 252 285 IPR019734 GO:0005515(InterPro)
Cre11g2310 1310 Gene3D Tetratricopeptide repeat domain 424 683 IPR011990 GO:0005515(InterPro)
Cre11g2310 1310 Gene3D Tetratricopeptide repeat domain 129 410 IPR011990 GO:0005515(InterPro)
Cre11g2310 1310 SMART tpr_5 578 611 IPR019734 GO:0005515(InterPro)
Cre11g2310 1310 SMART tpr_5 184 217 IPR019734 GO:0005515(InterPro)
Cre11g2310 1310 SMART tpr_5 218 251 IPR019734 GO:0005515(InterPro)
Cre11g2310 1310 SMART tpr_5 293 326 IPR019734 GO:0005515(InterPro)
Cre11g2310 1310 SMART tpr_5 115 149 IPR019734 GO:0005515(InterPro)
Cre11g2310 1310 SMART tpr_5 252 285 IPR019734 GO:0005515(InterPro)
Cre11g2310 1310 SMART tpr_5 474 507 IPR019734 GO:0005515(InterPro)
Cre11g2310 1310 SUPERFAMILY TPR-like 66 215 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2310 K12600 - - csv:101220693 1418.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g20 . Blo12g00837 . Bda03g00338 . Bpe04g00298 Bma04g00307 Bma01g02430 . . Cma01g02054 . Car01g01618 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02439 Csa04g02753 . . . . . . . . . . . Cmo01g02110 . . . . . . Cpe02g00004 . . . . . . . Cla11g01865 Cam11g1935 Cec11g1960 Cco11g1974 Clacu11g2100 Cmu11g1902 Cre11g2310 . . Chy07g00441 Cme07g00009