Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g2313 ATGCACATACGTAGTAACAAAAGGCCAGAGGGGACTTGTAAACTCCTACATCATAAAAATCAATTGGCTGATCGGAAGTCCCAGATGGTGAAGGAGACGGAATACTATGACGTGCTTGGAGTCAGCCCCGCGGCTACAGAAGCCGAAATCAAGAAAGCTTATTACATCAAGGCACGGCAGGTTCATCCAGATAAAAACCCAAGTGATCCTCTGGCAGCACAAAAATTTCAGGTTCTAGGAGAAGCTTACCAAGTATTAAGCGATCCAGCTCAAAGACAAGCTTATGATGCTCATGGGAAGTCTGGAATCTCAACTGATGCAATTATTGATCCTGCAGCAATTTTTGCAATGCTTTTTGGAAGTGAACTTTTTGAGGAATACATAGGTGAGCTTGCCATGGCATCGATGGCTTCTCTGGACATTTTCACTGAAGGGGAGCAATTTGATGCTAAACGGTTGCAAGAGAAGATGAGGATTGTCCAAAAGGAAAGAGAAGAAAAACTTTCAGAAATTTTGAAAGGTCGTCTCAACCAGTATGTTCAAGGGAACAAAGATGATTTTATTAATCATGCTGAAGCTGAAGTAGCAAGACTCTCCAACGCAG 604 42.55 MHIRSNKRPEGTCKLLHHKNQLADRKSQMVKETEYYDVLGVSPAATEAEIKKAYYIKARQVHPDKNPSDPLAAQKFQVLGEAYQVLSDPAQRQAYDAHGKSGISTDAIIDPAAIFAMLFGSELFEEYIGELAMASMASLDIFTEGEQFDAKRLQEKMRIVQKEREEKLSEILKGRLNQYVQGNKDDFINHAEAEVARLSNA 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34742313 34758194 - CrPI670011_11g023130.1 Cre11g2313 514058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g2313 201 Gene3D DnaJ domain 19 111 IPR036869 -
Cre11g2313 201 CDD DnaJ 34 88 IPR001623 -
Cre11g2313 201 PRINTS DnaJ domain signature 54 69 IPR001623 -
Cre11g2313 201 PRINTS DnaJ domain signature 91 110 IPR001623 -
Cre11g2313 201 PRINTS DnaJ domain signature 36 54 IPR001623 -
Cre11g2313 201 PRINTS DnaJ domain signature 71 91 IPR001623 -
Cre11g2313 201 SUPERFAMILY Chaperone J-domain 29 128 IPR036869 -
Cre11g2313 201 ProSiteProfiles dnaJ domain profile. 34 99 IPR001623 -
Cre11g2313 201 FunFam Chaperone protein dnaJ 10 29 111 - -
Cre11g2313 201 ProSitePatterns Nt-dnaJ domain signature. 76 95 IPR018253 -
Cre11g2313 201 SMART dnaj_3 33 91 IPR001623 -
Cre11g2313 201 Coils Coil 150 170 - -
Cre11g2313 201 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 17 201 IPR052423 -
Cre11g2313 201 Pfam DnaJ domain 34 96 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g2313 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g0904 Cre-Chr11:6238599 Cre11g2313 Cre-Chr11:34742313 1.30E-54 dispersed
Cre11g2313 Cre-Chr11:34742313 Cre10g1842 Cre-Chr10:32993762 1.10E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g3 Blo01g01664 . . Bda03g00342 Bpe02g00277 Bpe04g00302 Bma04g00311 Bma01g02435 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 Csa04g02758 . . . . . Bda01g01580 Bpe02g01770 . . . . . . . . . . . . . . . . . . . Cla11g01868 Cam11g1938 Cec11g1964 . Clacu11g2104 Cmu11g1905 Cre11g2313 . . Chy07g00444 .