Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00005 ATGGATCCAGAAACCCTCTCCGCCACTTTGTTCAAATGGGAGCCTCGAGAAATGGTGGGAGGCGGCAGCGGCGCACCCCTCCCAGCACCACTGCCCCCCTACTCGCTGCGGCCGAGGGAGTTGGGATTGGGAGGCCTGGAGGATTTGTTTCAGGCTTACGGAATCAGGTACTACACTGCCGCTAAAATTGCAGAACTCGGATTCACCGTCAGCACCCTCGTGGACATGAAAGACGAAGAGTTGGAGGACATGATGAACAGCCTCTCTCACATTTTCCGCTGGGACCTTCTAGTGGGTGAAAGGTACGGAATTAAGGCTGCTGTACGAGCCGAACGCAGACGTCTAGATGACGAGATTGAATCCTCCAGACGCCGTCACCTCTTGTCCAACGATACCACTACTAACGTCGTTCTCGATGCCCTCTCTCAGGAAGGGCTATCGGAAGAGCCGGTGCAGCAGGAGAAAGAGGCGGTGGGGAGCGGGGGAGGAGGAGGAGCGTGGGAGGCAGTTGTAGCCGCTGAGATGAGGAAGAAGCAGCGTAGGAGAAATGGATCAAAAAAGAAGCAGGTGATAGCGATGGAGGAGGATAACGATGAAAATGAGGGAGCTGGGGACGAGGAGGAGAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGAGGAAAGAAAAACGGCCTCGACTATCTTTTTCACCTCTATGAACAGTGTCGTGAATTTTTGATCCAAGTCCAGAACATTGCCAAGGAAAGAGGAGAAAAATGCCCCACTAAGGTGACGAACCAGGTGTTTAGATATGCAAAGAAGGCGGGTGCAAGTTACATAAATAAGCCGAAAATGAGACACTACGTGCATTGCTATGCACTGCATTGTCTGGACGAGGAGGCGTCGAACGCATTGAGGAGCGTTTTCAAAGAGAGAGGCGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTCTGGTGACCATAGCAGGTACCCAAGGTTGGGACATCGATGCCATTTTCAATGCACATCCACGCCTTGCCATCTGGTATGTGCCTACCAAACTCCGCCAACTCTGCCACGCAGAGCGCAATGGTTCGACGGCCTCCACCTCCACTGCCTCCGCTCACTTGCCTTTTTAA 1161 53.32 MDPETLSATLFKWEPREMVGGGSGAPLPAPLPPYSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELEDMMNSLSHIFRWDLLVGERYGIKAAVRAERRRLDDEIESSRRRHLLSNDTTTNVVLDALSQEGLSEEPVQQEKEAVGSGGGGGAWEAVVAAEMRKKQRRRNGSKKKQVIAMEEDNDENEGAGDEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRSVFKERGENVGAWRQACYKPLVTIAGTQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNGSTASTSTASAHLPF* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49628 52342 + CsaV3_1G000050.1 Csa01g00005 514502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00005 386 PANTHER PROTEIN LEAFY 1 386 IPR002910 GO:0003677|GO:0006355
Csa01g00005 386 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 211 374 IPR035209 GO:0003677
Csa01g00005 386 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Csa01g00005 386 MobiDBLite consensus disorder prediction 143 164 - -
Csa01g00005 386 Gene3D Protein LEAFY 212 380 IPR038276 -
Csa01g00005 386 PANTHER PROTEIN LEAFY 1 386 - -
Csa01g00005 386 Coils Coil 105 125 - -
Csa01g00005 386 MobiDBLite consensus disorder prediction 176 215 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30593 PF17538 C_LFY_FLO 1.00E-106 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00005 - - csv:101205888 707.212