Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00006 ATGGTTCATGCCAATGCTATGGATATGTCCATTCAATGGTTGGTGTTTATTCCACAGGAACAAAAGTTTACTCGAGTGATTATTGGCTTAGATGTGCCAGGAACCCTTTTCTGTTCTGGAGAATATAATAGGTATATCAAGGAAAGGGAAAAATTAAAAGTGGATCCGAAGCGAGGGAAGAGAGCACTTTGTTCCGATGAATCGGAGGAAGAAAATCCGTTCCCGATCTACTCAGCTAGATCTGAATATGACACGTCGGCGATGGTATCTGCGTTAACTCAAGTGATAACGAGTGGGAGTGGGAGTGGCAGTGGGAGTAGCAGAAGCCTATCAGTAGTAGAAGAACCTGCAGCATCAGCGCGGGGAGATAATGAAGAAGGAGTGAAAAGGGAAAGCCGACATTATCGAGGAGTAAGGCAGAGACCGTGGGGAAAATGGGCTGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGTTGGGCACCTTTGACACTGCCGAGGCTGCGGCACTTGCTTACGATGAAGCTGCCCTCAGATTTAAGGGCACAAAAGCCAAGCTTAACTTCCCTGAGAGACTTACCACCCCACCATCATACCCCTATGCCCCCTATCATCATCAGGATGATTACCAAAACCACCGCTTTTAG 651 47.16 MVHANAMDMSIQWLVFIPQEQKFTRVIIGLDVPGTLFCSGEYNRYIKEREKLKVDPKRGKRALCSDESEEENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLSVVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYPYAPYHHQDDYQNHRF* 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57226 59022 - CsaV3_1G000060.1 Csa01g00006 514503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00006 216 MobiDBLite consensus disorder prediction 119 133 - -
Csa01g00006 216 CDD AP2 134 192 IPR001471 GO:0003700|GO:0006355
Csa01g00006 216 Gene3D AP2/ERF domain 133 193 IPR036955 GO:0003700|GO:0006355
Csa01g00006 216 Pfam AP2 domain 134 183 IPR001471 GO:0003700|GO:0006355
Csa01g00006 216 MobiDBLite consensus disorder prediction 98 113 - -
Csa01g00006 216 SUPERFAMILY DNA-binding domain 134 192 IPR016177 GO:0003677
Csa01g00006 216 SMART rav1_2 134 197 IPR001471 GO:0003700|GO:0006355
Csa01g00006 216 MobiDBLite consensus disorder prediction 98 133 - -
Csa01g00006 216 ProSiteProfiles AP2/ERF domain profile. 134 191 IPR001471 GO:0003700|GO:0006355
Csa01g00006 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 90 202 - -
Csa01g00006 216 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Csa01g00006 216 PRINTS Ethylene responsive element binding protein signature 157 173 IPR001471 GO:0003700|GO:0006355
Csa01g00006 216 PANTHER DNA-BINDING DOMAIN 90 202 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00006 Csa-Chr1:57226 Csa06g02825 Csa-Chr6:24644291 1.58E-32 dispersed
Csa01g00006 Csa-Chr1:57226 Csa06g00774 Csa-Chr6:6205084 1.36E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30594 PF00847 AP2 4.80E-15 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00006 - - csv:101206124 245.743