Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00006 | ATGGTTCATGCCAATGCTATGGATATGTCCATTCAATGGTTGGTGTTTATTCCACAGGAACAAAAGTTTACTCGAGTGATTATTGGCTTAGATGTGCCAGGAACCCTTTTCTGTTCTGGAGAATATAATAGGTATATCAAGGAAAGGGAAAAATTAAAAGTGGATCCGAAGCGAGGGAAGAGAGCACTTTGTTCCGATGAATCGGAGGAAGAAAATCCGTTCCCGATCTACTCAGCTAGATCTGAATATGACACGTCGGCGATGGTATCTGCGTTAACTCAAGTGATAACGAGTGGGAGTGGGAGTGGCAGTGGGAGTAGCAGAAGCCTATCAGTAGTAGAAGAACCTGCAGCATCAGCGCGGGGAGATAATGAAGAAGGAGTGAAAAGGGAAAGCCGACATTATCGAGGAGTAAGGCAGAGACCGTGGGGAAAATGGGCTGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGTTGGGCACCTTTGACACTGCCGAGGCTGCGGCACTTGCTTACGATGAAGCTGCCCTCAGATTTAAGGGCACAAAAGCCAAGCTTAACTTCCCTGAGAGACTTACCACCCCACCATCATACCCCTATGCCCCCTATCATCATCAGGATGATTACCAAAACCACCGCTTTTAG | 651 | 47.16 | MVHANAMDMSIQWLVFIPQEQKFTRVIIGLDVPGTLFCSGEYNRYIKEREKLKVDPKRGKRALCSDESEEENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLSVVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYPYAPYHHQDDYQNHRF* | 217 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 57226 | 59022 | - | CsaV3_1G000060.1 | Csa01g00006 | 514503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00006 | 216 | MobiDBLite | consensus disorder prediction | 119 | 133 | - | - | |
Csa01g00006 | 216 | CDD | AP2 | 134 | 192 | IPR001471 | GO:0003700|GO:0006355 | |
Csa01g00006 | 216 | Gene3D | AP2/ERF domain | 133 | 193 | IPR036955 | GO:0003700|GO:0006355 | |
Csa01g00006 | 216 | Pfam | AP2 domain | 134 | 183 | IPR001471 | GO:0003700|GO:0006355 | |
Csa01g00006 | 216 | MobiDBLite | consensus disorder prediction | 98 | 113 | - | - | |
Csa01g00006 | 216 | SUPERFAMILY | DNA-binding domain | 134 | 192 | IPR016177 | GO:0003677 | |
Csa01g00006 | 216 | SMART | rav1_2 | 134 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Csa01g00006 | 216 | MobiDBLite | consensus disorder prediction | 98 | 133 | - | - | |
Csa01g00006 | 216 | ProSiteProfiles | AP2/ERF domain profile. | 134 | 191 | IPR001471 | GO:0003700|GO:0006355 | |
Csa01g00006 | 216 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 | 90 | 202 | - | - | |
Csa01g00006 | 216 | PRINTS | Ethylene responsive element binding protein signature | 135 | 146 | IPR001471 | GO:0003700|GO:0006355 | |
Csa01g00006 | 216 | PRINTS | Ethylene responsive element binding protein signature | 157 | 173 | IPR001471 | GO:0003700|GO:0006355 | |
Csa01g00006 | 216 | PANTHER | DNA-BINDING DOMAIN | 90 | 202 | IPR044808 | GO:0003700|GO:0009873 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00006 | Csa-Chr1:57226 | Csa06g02825 | Csa-Chr6:24644291 | 1.58E-32 | dispersed | |
Csa01g00006 | Csa-Chr1:57226 | Csa06g00774 | Csa-Chr6:6205084 | 1.36E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30594 | PF00847 | AP2 | 4.80E-15 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00006 | - | - | csv:101206124 | 245.743 |