Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00007 ATGACCCAGCCGGTGAAGAAACCCGAAGTGGAGGAACTTTGCTTTGCCCACTCGCCTGAAATCACTACGGAAGACCTAACTCCAGATGAATGCAATAGCACCGTCGAAGACCAAGAGGCGACACTCATTGCTCTAGTCGAGCATCGTACTCGTGAAGTCCACCATCTCCAGCAGCGCATTTCCTACTACACTCGTCAGCTAGAGGAAGCAGAGAAGCGGTTACAGGAATCTGAATCTTTGTTGGCTCGCTCTCAAGGTCCGCGTTATACTTTGCCATCAAGAAGTTCTCAGGATTGTGGATTCGAATGTGTGGAGGCTGAGCCTACATCAACCTCTCCTATTCATGGCAATGGGGATTTGGAAGCGAAACCACTTCTTGGTTCCAGTCACAACCCTTCAATTCCCAATCGCTCTAATCTTGCCACTACAGGTGAACAAGAAAAACCTTGTATGGTCACTATTGGGAGAGTTGATGATCAGAGTGATATGAAAAGAAGAAAGTTTGAACAAAAAGATCACAAGGAACTGATTTCATTAGTACGTAGTAGCTCTTCCTCATTGACTGCCCAACTGGATGCTAGTTATTATTTTACTAGTCAGCACAAGAGAAAACTGAGAAGCCTTGCTCCAGGTCCAGTCAATGACCAACTTTTTGTTACTAGTGCTTTGGATGGAATGATCAACCTGTGGCAAATTCAGTCGAAGGGGTCTTTTGCTTCTCTTCTTTGTGCTACAAACTGTCTGTCTCAAAAGCAGAGGAGATGGCCTGAAGGTATAGCTTGGCACCCGGGTGGAAACAACCTTTTTTCTGTGTACAACGCTGATGGTGGAGATTCTCAAATATCGGTCTTGAATTTCAATAGGACTAAAGAGAAGGCAAGTGTTACTTTCTTAGAGGATAAGCCTCATGTTAAAGGCATTATCAATGACATTAGTTTCTTGCCTTGGGATTCTGTTCCGTTCATTACCGGTGGCAGTGATCATGCTGTCGTTTTATGGAATATGAGAGATAAATACAACACGTGGAAACCAGAGCTGTTGCACAGGAATCTGCACTCTTCTGCTGTCATGGGTGTCTCTGGGATGCAGATGAAGCAAATCGTACTTTCTGCAGGTTCAGACAAGAGACTCCTTGGTTTTGATGTTCAAGTAGGAAGCACACTCTTCAAGCATCAACTAGAGAGTAAATGTATGAGCGTGTTGCCTAATCCATGTGACTTTAACCTGTTCATGGTCCAGACAGGGAGTCCAGAAAATCAACTTAGATTATTTGACATTAGATTGGAACAGAAAGAAGTCCACAGTTTTGGGTGGAAGCAAGAAAACAGTGAATCCCAATCAGCTTTGATAAAGCAGTCATGGTCACCAAATGGATTACACTTAACGTCTGGTTCATCAGATCCTGTAATTCATGTTTTTGACATCAGGTATAATTCTCACATGCCATCTCAATCACTTAAAGCTCATCAGAAGCGCGTCTTCAAAGCTGTTTGGCTCCGTTCTCTTCCTTTTCTTGTTTCCATTTCATCTGATTTGAACATTGGACTGCACAAAATGGTCTAG 1563 43.44 MTQPVKKPEVEELCFAHSPEITTEDLTPDECNSTVEDQEATLIALVEHRTREVHHLQQRISYYTRQLEEAEKRLQESESLLARSQGPRYTLPSRSSQDCGFECVEAEPTSTSPIHGNGDLEAKPLLGSSHNPSIPNRSNLATTGEQEKPCMVTIGRVDDQSDMKRRKFEQKDHKELISLVRSSSSSLTAQLDASYYFTSQHKRKLRSLAPGPVNDQLFVTSALDGMINLWQIQSKGSFASLLCATNCLSQKQRRWPEGIAWHPGGNNLFSVYNADGGDSQISVLNFNRTKEKASVTFLEDKPHVKGIINDISFLPWDSVPFITGGSDHAVVLWNMRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLESKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSWSPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNIGLHKMV* 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59513 63138 - CsaV3_1G000070.1 Csa01g00007 514504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00007 520 MobiDBLite consensus disorder prediction 79 97 - -
Csa01g00007 520 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 519 - -
Csa01g00007 520 MobiDBLite consensus disorder prediction 108 144 - -
Csa01g00007 520 Gene3D - 396 518 IPR015943 GO:0005515
Csa01g00007 520 MobiDBLite consensus disorder prediction 129 144 - -
Csa01g00007 520 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 240 IPR001680 GO:0005515
Csa01g00007 520 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 519 - -
Csa01g00007 520 Gene3D - 125 395 IPR015943 GO:0005515
Csa01g00007 520 SMART WD40_4 188 231 IPR001680 GO:0005515
Csa01g00007 520 SMART WD40_4 294 334 IPR001680 GO:0005515
Csa01g00007 520 SMART WD40_4 343 381 IPR001680 GO:0005515
Csa01g00007 520 SMART WD40_4 479 518 IPR001680 GO:0005515
Csa01g00007 520 SMART WD40_4 429 474 IPR001680 GO:0005515
Csa01g00007 520 Coils Coil 53 80 - -
Csa01g00007 520 Pfam WD domain, G-beta repeat 451 474 IPR001680 GO:0005515
Csa01g00007 520 SUPERFAMILY WD40 repeat-like 204 515 IPR036322 GO:0005515
Csa01g00007 520 MobiDBLite consensus disorder prediction 78 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00007 - - - csv:101206361 1043.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00992 Csa01g00007 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00007 Csa-Chr1:59513 Csa05g02193 Csa-Chr5:24792932 4.04E-06 dispersed
Csa01g00007 Csa-Chr1:59513 Csa01g00992 Csa-Chr1:6181754 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g19 . . . Bda15g00699 Bpe12g00456 . . . . . . . . . . Cpe20g00288 . Bhi02g00609 . . . . . . . . . . . . . . . . . Lsi02g00529 Csa01g00992 Chy12g01142 Cme12g01560 . . . . . . . Bma08g00282 Sed01g1537 . . . . Car13g00674 . . . Bhi08g01542 Tan05g3013 Cmetu12g1640 Lac10g0615 Hepe07g2080 . . Cla03g00381 Cam03g0400 Cec03g0386 Cco03g0401 Clacu03g0399 Cmu03g1004 Cre03g0696 . Csa01g00007 Chy02g02707 Cme02g02115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002709 1 5 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 2 2 2 3 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00007 Csa_Chr01 FPKM 10.442059 12.402837 13.524415 11.25994 15.681691 16.522787 15.794593 12.670382 11.652977 12.544371