Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00009 | ATGGCCTCCTCCGAGGTTTCGATCAACCCCAATTCCGCCTCCTTCAACGACCATGCCGATTCTACCAAAGACACCTCCGATCCACCCAACGCTCTCTCTCCCAGGGATGCTGATATCGCTCTCTACACCGAGCTCTGGAATGCTTGTGCTGGTCCTCTCGTTTCTGTTCCTCGTGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACTAGTCAAGTGGCGGACCAGCAGATGCCTGTTTATAACCTTCCATCGAAGATCCTCTGCCGCGTTATTAATGTGCACTTAAAGGCCGAGCCAGACACCGATGAGGTATTTGCACAGATCACTTTGCTTCCAGAGGCTAATCAAGATGAGCATGCTGTAGACAAGGAACCTCCACCTCCTCCCCCGAGGAGATTTCACGTGCATTCTTTTTGCAAGACTCTGACTGCTTCTGACACTAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAGCCTCCTACCCAGGAGTTGGTTGCAAAGGATTTGCATGGAAATGAATGGCGTTTCCGTCATATATTTCGAGGGCAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTCTTTGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTTTTGAGGGGTGAGAATGGAGAGCTGCGTGTTGGTGTGAGGCGTGCAATGAGACAACATGGCAATGTTCCATCATCGGTCATATCTAGCCACAGCATGCATCTTGGTGTGCTTGCGACTGCTTGGCATGCTATTTCGACAGGCACATTGTTCACTGTCTACTATAAGCCTAGGACAAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATCAAGAAGAGCTACACCATAGGAATGCGGTTTAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAGCAGAGGTTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGATGAAACTTCTACTATTTCTCGTCCAGAGAAAGTCTCACCGTGGAAAATTGAGCCGGCCCTTGCTCCTCCTGCGCTGAATCCCCTTCCTATGACTAGACCTAAAAGGCCTCGATCAAACATGGTCTCTACATCCCCTGATTCCTCTGTTCTTACACGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCGTTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGTAATTTTATCGATGGCAGTGATCCAGATGCGGCTGAAAAATCTGTTATGTGGCCTCCTTCATTAGATGATGAGAAAGTTGACGTGGTTTCTACATCTAAGAAACATGGAGCAGATAGCTGGATACCTCCAGGAAGGAGTGAGCCAACCTACGCAGATCTACTGTCAGGTTTTGGAACTGATATGGATTCTTCTCATGGTGTTCGTGCTGCCATGGGAGATTCTGCATTAGTCACTGCTAATTCAATCAGAAAGCATGCCATGGAACACGATGGAAAATTTAGCTTCCTTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTCTCGCTCAACCTGGTTGACTCCAGTCAGAAGGGTCATATTCGGGCTGGTGACTTATCTTATCAAGTGAGAGGAAATGCTACCTTCAATGGATTTGGCGATCATTCCATATCCCATTGTCATAGAACTGAGCAGCCTCATGGAAATTGGCTGATGCCTCCACCTTCATCTCATTTTGACTATCCAATTCATTCAAGTGAACTGATGTCAAAACCTATGTTATTTCAGAACCAAGATATACTGAAACCCAAAGATGGGAATTGTAAGCTTTTCGGTATTTCCCTTGTTAAAAATCCTGCCATTCCAGACCCTGTAGGTTTGAACAGAAACATGATGAACGAGGCGGATGTGATGCATCCCAATGTACATCAAATCCATTCAAGCGAGTCTGGCCTGAAGTCTGAACTACCTAGGGTTTTAAAGTTGGATAAGTCAGTTGCCATCAGTGAGGCCGATAAGTTGCAGCAAACATGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACGAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAACTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGTGAGCTGCAGGCTCCCAAAAAGAATTGGCTTATTGTATATACGGATGATGAAGGTGACATGATGCTTGTTGGAGACGATCCCTGGCGGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAAGTCCAGAAGATGAATCCAGGATCCCTAAATTTGAAAGGCGATGAAAATCCATCAGTTGAAGGGGAAGAGGTAAAAGAGACCAAAAGTCAGGCAGTTCCTTCGATGTCAGCACCAGAGAGTTCTTAG | 2520 | 46.47 | MASSEVSINPNSASFNDHADSTKDTSDPPNALSPRDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTSQVADQQMPVYNLPSKILCRVINVHLKAEPDTDEVFAQITLLPEANQDEHAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTLFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVSTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDGSDPDAAEKSVMWPPSLDDEKVDVVSTSKKHGADSWIPPGRSEPTYADLLSGFGTDMDSSHGVRAAMGDSALVTANSIRKHAMEHDGKFSFLGGSSWSVLPSGLSLNLVDSSQKGHIRAGDLSYQVRGNATFNGFGDHSISHCHRTEQPHGNWLMPPPSSHFDYPIHSSELMSKPMLFQNQDILKPKDGNCKLFGISLVKNPAIPDPVGLNRNMMNEADVMHPNVHQIHSSESGLKSELPRVLKLDKSVAISEADKLQQTCKSQGTSARSCTKVHKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELQAPKKNWLIVYTDDEGDMMLVGDDPWREFCGMVRKIFIYTREEVQKMNPGSLNLKGDENPSVEGEEVKETKSQAVPSMSAPESS* | 840 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 68012 | 78346 | + | CsaV3_1G000090.1 | Csa01g00009 | 514506 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00009 | 839 | Gene3D | - | 144 | 249 | IPR015300 | - | |
Csa01g00009 | 839 | SUPERFAMILY | DNA-binding pseudobarrel domain | 144 | 276 | IPR015300 | - | |
Csa01g00009 | 839 | Pfam | Auxin response factor | 273 | 355 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Csa01g00009 | 839 | Pfam | B3 DNA binding domain | 147 | 248 | IPR003340 | GO:0003677 | |
Csa01g00009 | 839 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 30 | 821 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Csa01g00009 | 839 | MobiDBLite | consensus disorder prediction | 381 | 421 | - | - | |
Csa01g00009 | 839 | ProSiteProfiles | B3 DNA-binding domain profile. | 147 | 249 | IPR003340 | GO:0003677 | |
Csa01g00009 | 839 | ProSiteProfiles | PB1 domain profile. | 714 | 798 | IPR000270 | GO:0005515 | |
Csa01g00009 | 839 | Pfam | AUX/IAA family | 761 | 799 | IPR033389 | - | |
Csa01g00009 | 839 | SMART | B3_2 | 147 | 249 | IPR003340 | GO:0003677 | |
Csa01g00009 | 839 | Gene3D | - | 310 | 380 | - | - | |
Csa01g00009 | 839 | PANTHER | AUXIN RESPONSE FACTOR 2 | 30 | 821 | - | - | |
Csa01g00009 | 839 | MobiDBLite | consensus disorder prediction | 803 | 839 | - | - | |
Csa01g00009 | 839 | CDD | B3_DNA | 145 | 247 | IPR003340 | GO:0003677 | |
Csa01g00009 | 839 | SUPERFAMILY | CAD & PB1 domains | 713 | 791 | - | - | |
Csa01g00009 | 839 | Gene3D | - | 710 | 803 | - | - | |
Csa01g00009 | 839 | MobiDBLite | consensus disorder prediction | 395 | 421 | - | - | |
Csa01g00009 | 839 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Csa01g00009 | 839 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00009 | Csa-Chr1:68012 | Csa05g01247 | Csa-Chr5:13139550 | 6.14E-41 | dispersed | |
Csa06g02262 | Csa-Chr6:20280542 | Csa01g00009 | Csa-Chr1:68012 | 9.22E-78 | dispersed | |
Csa06g03662 | Csa-Chr6:29437655 | Csa01g00009 | Csa-Chr1:68012 | 2.41E-113 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30595 | PF02309 | AUX_IAA | 5.60E-11 | CL0072 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00009 | - | - | csv:101206845 | 1697.56 |