Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00009 ATGGCCTCCTCCGAGGTTTCGATCAACCCCAATTCCGCCTCCTTCAACGACCATGCCGATTCTACCAAAGACACCTCCGATCCACCCAACGCTCTCTCTCCCAGGGATGCTGATATCGCTCTCTACACCGAGCTCTGGAATGCTTGTGCTGGTCCTCTCGTTTCTGTTCCTCGTGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACTAGTCAAGTGGCGGACCAGCAGATGCCTGTTTATAACCTTCCATCGAAGATCCTCTGCCGCGTTATTAATGTGCACTTAAAGGCCGAGCCAGACACCGATGAGGTATTTGCACAGATCACTTTGCTTCCAGAGGCTAATCAAGATGAGCATGCTGTAGACAAGGAACCTCCACCTCCTCCCCCGAGGAGATTTCACGTGCATTCTTTTTGCAAGACTCTGACTGCTTCTGACACTAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAGCCTCCTACCCAGGAGTTGGTTGCAAAGGATTTGCATGGAAATGAATGGCGTTTCCGTCATATATTTCGAGGGCAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTCTTTGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTTTTGAGGGGTGAGAATGGAGAGCTGCGTGTTGGTGTGAGGCGTGCAATGAGACAACATGGCAATGTTCCATCATCGGTCATATCTAGCCACAGCATGCATCTTGGTGTGCTTGCGACTGCTTGGCATGCTATTTCGACAGGCACATTGTTCACTGTCTACTATAAGCCTAGGACAAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATCAAGAAGAGCTACACCATAGGAATGCGGTTTAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAGCAGAGGTTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGATGAAACTTCTACTATTTCTCGTCCAGAGAAAGTCTCACCGTGGAAAATTGAGCCGGCCCTTGCTCCTCCTGCGCTGAATCCCCTTCCTATGACTAGACCTAAAAGGCCTCGATCAAACATGGTCTCTACATCCCCTGATTCCTCTGTTCTTACACGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCGTTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGTAATTTTATCGATGGCAGTGATCCAGATGCGGCTGAAAAATCTGTTATGTGGCCTCCTTCATTAGATGATGAGAAAGTTGACGTGGTTTCTACATCTAAGAAACATGGAGCAGATAGCTGGATACCTCCAGGAAGGAGTGAGCCAACCTACGCAGATCTACTGTCAGGTTTTGGAACTGATATGGATTCTTCTCATGGTGTTCGTGCTGCCATGGGAGATTCTGCATTAGTCACTGCTAATTCAATCAGAAAGCATGCCATGGAACACGATGGAAAATTTAGCTTCCTTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTCTCGCTCAACCTGGTTGACTCCAGTCAGAAGGGTCATATTCGGGCTGGTGACTTATCTTATCAAGTGAGAGGAAATGCTACCTTCAATGGATTTGGCGATCATTCCATATCCCATTGTCATAGAACTGAGCAGCCTCATGGAAATTGGCTGATGCCTCCACCTTCATCTCATTTTGACTATCCAATTCATTCAAGTGAACTGATGTCAAAACCTATGTTATTTCAGAACCAAGATATACTGAAACCCAAAGATGGGAATTGTAAGCTTTTCGGTATTTCCCTTGTTAAAAATCCTGCCATTCCAGACCCTGTAGGTTTGAACAGAAACATGATGAACGAGGCGGATGTGATGCATCCCAATGTACATCAAATCCATTCAAGCGAGTCTGGCCTGAAGTCTGAACTACCTAGGGTTTTAAAGTTGGATAAGTCAGTTGCCATCAGTGAGGCCGATAAGTTGCAGCAAACATGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACGAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAACTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGTGAGCTGCAGGCTCCCAAAAAGAATTGGCTTATTGTATATACGGATGATGAAGGTGACATGATGCTTGTTGGAGACGATCCCTGGCGGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAAGTCCAGAAGATGAATCCAGGATCCCTAAATTTGAAAGGCGATGAAAATCCATCAGTTGAAGGGGAAGAGGTAAAAGAGACCAAAAGTCAGGCAGTTCCTTCGATGTCAGCACCAGAGAGTTCTTAG 2520 46.47 MASSEVSINPNSASFNDHADSTKDTSDPPNALSPRDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTSQVADQQMPVYNLPSKILCRVINVHLKAEPDTDEVFAQITLLPEANQDEHAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTLFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVSTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDGSDPDAAEKSVMWPPSLDDEKVDVVSTSKKHGADSWIPPGRSEPTYADLLSGFGTDMDSSHGVRAAMGDSALVTANSIRKHAMEHDGKFSFLGGSSWSVLPSGLSLNLVDSSQKGHIRAGDLSYQVRGNATFNGFGDHSISHCHRTEQPHGNWLMPPPSSHFDYPIHSSELMSKPMLFQNQDILKPKDGNCKLFGISLVKNPAIPDPVGLNRNMMNEADVMHPNVHQIHSSESGLKSELPRVLKLDKSVAISEADKLQQTCKSQGTSARSCTKVHKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELQAPKKNWLIVYTDDEGDMMLVGDDPWREFCGMVRKIFIYTREEVQKMNPGSLNLKGDENPSVEGEEVKETKSQAVPSMSAPESS* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 68012 78346 + CsaV3_1G000090.1 Csa01g00009 514506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00009 839 Gene3D - 144 249 IPR015300 -
Csa01g00009 839 SUPERFAMILY DNA-binding pseudobarrel domain 144 276 IPR015300 -
Csa01g00009 839 Pfam Auxin response factor 273 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa01g00009 839 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Csa01g00009 839 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 821 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa01g00009 839 MobiDBLite consensus disorder prediction 381 421 - -
Csa01g00009 839 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Csa01g00009 839 ProSiteProfiles PB1 domain profile. 714 798 IPR000270 GO:0005515
Csa01g00009 839 Pfam AUX/IAA family 761 799 IPR033389 -
Csa01g00009 839 SMART B3_2 147 249 IPR003340 GO:0003677
Csa01g00009 839 Gene3D - 310 380 - -
Csa01g00009 839 PANTHER AUXIN RESPONSE FACTOR 2 30 821 - -
Csa01g00009 839 MobiDBLite consensus disorder prediction 803 839 - -
Csa01g00009 839 CDD B3_DNA 145 247 IPR003340 GO:0003677
Csa01g00009 839 SUPERFAMILY CAD & PB1 domains 713 791 - -
Csa01g00009 839 Gene3D - 710 803 - -
Csa01g00009 839 MobiDBLite consensus disorder prediction 395 421 - -
Csa01g00009 839 MobiDBLite consensus disorder prediction 1 34 - -
Csa01g00009 839 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00009 Csa-Chr1:68012 Csa05g01247 Csa-Chr5:13139550 6.14E-41 dispersed
Csa06g02262 Csa-Chr6:20280542 Csa01g00009 Csa-Chr1:68012 9.22E-78 dispersed
Csa06g03662 Csa-Chr6:29437655 Csa01g00009 Csa-Chr1:68012 2.41E-113 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30595 PF02309 AUX_IAA 5.60E-11 CL0072 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00009 - - csv:101206845 1697.56