Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00011 ATGGAAAAACACCATCACCTTCAACATCAGGAAATCAAGGACCTCGACTTGGATCTCGGACCCGACGAGTCTGACCTTGCCCCTCTCCCCCCCACCGTCACTTCCCGGGTACTACACATGTTGGGAGACATCGCAGCAGGTCCCGCTTACAGGTTTTCCCAATGGCTTGAACTCGTCCGTAAACGTAGCGGCAAACATCGCGCTTCTGCCTTCCACAACCGCCCTCATCCACCATTCGATATGCCTTTCGGTGCTGAGGAACTTGTCAATCAATCAATAAATCTTCCAGCTCCCGAGCAATCAACTGAAACAAATCTGTGGGATAGACTTGCTAAAGCTTCAGTGTTGGATATCGAGTCAAGCTCTTTCTCGTGGGATAGGCTTTTATCTCTTCACCGCACCGAACACAGTAGTAGCACCGAACATTCGGAAGATGAGATGAATAAAGCCCTTGAGGTCACTGTAAATTCTGGTGGAGTCGTTTTCTTTGCACTCTTCAATCAGCTTGGATATGATGATAATCTTCCAAAGGAAGCAGCTGCTGTGATAAAGATATCCTCTTCAAGAATGGCCACACAATCTGAACGCCTTGGCTATGAATTTGCCAAGTGGCTTGGGGTTCAAACTCCACAGGCTAGAGTTATTCATAATTCCAGCACGGAATGGCTCCAAATAAAAGAAGCTGCAGAGAAAGCACGAGATATCGCCTGTTTGGAGGGTGATGAGGTTGGTGAAATGACGTGTTCTGAACTACTGGAAGCACTTGAATTTAGCAGATGTCTTTTTCTAATGAGCTATGTGCATGGATCTCCATTGTTAGAAAGCTCAAGTGCATTTGAATCACGAGAAATTGCTGAAAAATTAGCTGCTGCGATTGGAAGGATCTTATTGTTGGATCTTGTCATTAGAAATGAAGATAGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCGGCAAATTTGCTCTTGGCTGATCGAATGGCGTGTGCAAATATGAACGCATTTGAGGAAGCCTTGGATTCTGCGATTAAGCGATACAAACCAAAAGTTATTACAACACTTCAAAAAGAAAGAAGGGGAACTTTAGTGGACAATAGATCGAGTTCTAATTCAGGGTTGATTTCAGAAATCCCTGAACTTTGTGATATTGTTGAATCCCCAAAATCTAGTAACCTAAGTGTAAAAAGTCAAATATCAGATGACACAATGCCTTGTGATTTTAATATTGTGGCTATTGACTCTGGTGTTCCCCGTCGTCCTCCTGCTGGAAAACGTGCTAATGACCAGTCAATTTACCCAAAATTAGTTGAGTTGTTACTTAATAGTTCTGAGTTCTCCTCTAATCTATTACATGACATTACAGGAGGGAAATTAGGGTTCCCTTCATCAACCGATGCCAACTCAACTTGTGGCATGCAGCCCTCAGAAATGAGTTATATTGTCCATGAATTTCGATATGGGTTTCGTGCTGCTCTTAGCGATTTGCAAGGATTTCACATATTTTTGCTTACACTTCACCAAAAGTTAGACAACTCATTACGAGCATTCATGAATATAATAAATAAATTTCCCCTGGGGGAATCTGACAAAGAGGATACAGGAATTCCTGAGTCCCATTTGCAGGGTTCTACCACTCTTCATTGTTTATCCCCACGTTGTAAGGAACGAGCCTCTAGTGATGGTAATATGGATGGTACAGAGTCAGTTCCAAGATCATCATCATCAGGAAATAAAGAAAGCTCAGACTTATCTTCTCCCTTGTCACGAGATAGCTCACAAGGAAAGTTATACAAGGGAAGTGCAGAGCCCATTCATAGCCTTCGTTTGACTGCAAAGCTCCGGGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAGTGCTTAAGAATGAAGCTGTTAAACTCTGCCAGGAGAACAAATTTAATACTGGGTTTTTTGAGGGCAGCGACAGTCATGGAGTTGTTGATGCTTATGAATTGAAGGTGAGACTTGAGCACATTCTTGAAAGGATTGCATTGATATCCGAGGCTGCAAATACAGAACGGCCTTCTTCAGTTACACCTGCCTTGTTTATAGGCGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAGTTACTCATATTTTATGCCTCTGCTCAAATGAAATTGGGCAGTCAGATTCGCAGTTTCCTGATCTATTTGAATACAAAAATTTTTCGATAAGTGATGATGAAGACTCAAACATCAGCAGTATCTTTGAAGAAGCTTCTGATTTTATTGACGGCGTTGAGAGAGAGGGTGGGAAGGTCTTAGTTCATTGTTTTGAAGGGAAAAGCAGGAGTGCCACATTGGTTCTTGCTTACTTGATGCTCAGAAAGAAATACACGCTGGTAAAAGCATGGAATTCTTTGAAACGGGTTCACCGTCGAGCTCAGCCTAATGATGGGTTTGCTAAAACATTATTAGAATTAGATCGAAGAATACACGGAAAGGTTTCCATGGAGTGGCAATCACGAAAACCAACCATGAAAGTTTGCCCAATTTGTGGAAAAAATGCTGGACTGAGCAGTAGCTCACTGAAGCTACATCTGCAGAAATCACACAAGAAGCTATCATCTGGGAGCGTAGACAGCGCAATGACCATGGAAATACAGAAGGCATTGACAGCTCTAAGAATCAGTCGTGGAGGAAGTGTTAGCCCAACCCAGAGGCAATCTCTTCTCATCCTGGATGAATAG 2760 42.75 MEKHHHLQHQEIKDLDLDLGPDESDLAPLPPTVTSRVLHMLGDIAAGPAYRFSQWLELVRKRSGKHRASAFHNRPHPPFDMPFGAEELVNQSINLPAPEQSTETNLWDRLAKASVLDIESSSFSWDRLLSLHRTEHSSSTEHSEDEMNKALEVTVNSGGVVFFALFNQLGYDDNLPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNSSTEWLQIKEAAEKARDIACLEGDEVGEMTCSELLEALEFSRCLFLMSYVHGSPLLESSSAFESREIAEKLAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLLADRMACANMNAFEEALDSAIKRYKPKVITTLQKERRGTLVDNRSSSNSGLISEIPELCDIVESPKSSNLSVKSQISDDTMPCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGFPSSTDANSTCGMQPSEMSYIVHEFRYGFRAALSDLQGFHIFLLTLHQKLDNSLRAFMNIINKFPLGESDKEDTGIPESHLQGSTTLHCLSPRCKERASSDGNMDGTESVPRSSSSGNKESSDLSSPLSRDSSQGKLYKGSAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTPALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDSNISSIFEEASDFIDGVEREGGKVLVHCFEGKSRSATLVLAYLMLRKKYTLVKAWNSLKRVHRRAQPNDGFAKTLLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALRISRGGSVSPTQRQSLLILDE* 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 91324 107838 - CsaV3_1G000110.1 Csa01g00011 514508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00011 919 CDD DSP 693 830 - -
Csa01g00011 919 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 692 836 IPR029021 -
Csa01g00011 919 MobiDBLite consensus disorder prediction 563 596 - -
Csa01g00011 919 ProSiteProfiles Dual specificity protein phosphatase domain profile. 692 837 IPR020422 GO:0006470|GO:0008138
Csa01g00011 919 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 2 918 - -
Csa01g00011 919 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 757 813 IPR000387 GO:0016311|GO:0016791
Csa01g00011 919 SMART dsp_5 692 834 IPR020422 GO:0006470|GO:0008138
Csa01g00011 919 SUPERFAMILY Protein kinase-like (PK-like) 54 430 IPR011009 -
Csa01g00011 919 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 2 918 IPR035010 GO:0004721|GO:0009737|GO:0043622
Csa01g00011 919 Gene3D Protein tyrosine phosphatase superfamily 670 838 IPR029021 -
Csa01g00011 919 Gene3D - 271 442 IPR036940 GO:0016301
Csa01g00011 919 MobiDBLite consensus disorder prediction 555 599 - -
Csa01g00011 919 Pfam Actin-fragmin kinase, catalytic 103 364 IPR015275 -
Csa01g00011 919 Pfam Dual specificity phosphatase, catalytic domain 708 833 IPR000340 GO:0008138|GO:0016311
Csa01g00011 919 ProSitePatterns Tyrosine specific protein phosphatases active site. 779 789 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00011 Csa-Chr1:91324 Csa05g00673 Csa-Chr5:4532432 1.70E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00011 K14165 - csv:101220184 1753.41