Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00011 ATGGAAAAACACCATCACCTTCAACATCAGGAAATCAAGGACCTCGACTTGGATCTCGGACCCGACGAGTCTGACCTTGCCCCTCTCCCCCCCACCGTCACTTCCCGGGTACTACACATGTTGGGAGACATCGCAGCAGGTCCCGCTTACAGGTTTTCCCAATGGCTTGAACTCGTCCGTAAACGTAGCGGCAAACATCGCGCTTCTGCCTTCCACAACCGCCCTCATCCACCATTCGATATGCCTTTCGGTGCTGAGGAACTTGTCAATCAATCAATAAATCTTCCAGCTCCCGAGCAATCAACTGAAACAAATCTGTGGGATAGACTTGCTAAAGCTTCAGTGTTGGATATCGAGTCAAGCTCTTTCTCGTGGGATAGGCTTTTATCTCTTCACCGCACCGAACACAGTAGTAGCACCGAACATTCGGAAGATGAGATGAATAAAGCCCTTGAGGTCACTGTAAATTCTGGTGGAGTCGTTTTCTTTGCACTCTTCAATCAGCTTGGATATGATGATAATCTTCCAAAGGAAGCAGCTGCTGTGATAAAGATATCCTCTTCAAGAATGGCCACACAATCTGAACGCCTTGGCTATGAATTTGCCAAGTGGCTTGGGGTTCAAACTCCACAGGCTAGAGTTATTCATAATTCCAGCACGGAATGGCTCCAAATAAAAGAAGCTGCAGAGAAAGCACGAGATATCGCCTGTTTGGAGGGTGATGAGGTTGGTGAAATGACGTGTTCTGAACTACTGGAAGCACTTGAATTTAGCAGATGTCTTTTTCTAATGAGCTATGTGCATGGATCTCCATTGTTAGAAAGCTCAAGTGCATTTGAATCACGAGAAATTGCTGAAAAATTAGCTGCTGCGATTGGAAGGATCTTATTGTTGGATCTTGTCATTAGAAATGAAGATAGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCGGCAAATTTGCTCTTGGCTGATCGAATGGCGTGTGCAAATATGAACGCATTTGAGGAAGCCTTGGATTCTGCGATTAAGCGATACAAACCAAAAGTTATTACAACACTTCAAAAAGAAAGAAGGGGAACTTTAGTGGACAATAGATCGAGTTCTAATTCAGGGTTGATTTCAGAAATCCCTGAACTTTGTGATATTGTTGAATCCCCAAAATCTAGTAACCTAAGTGTAAAAAGTCAAATATCAGATGACACAATGCCTTGTGATTTTAATATTGTGGCTATTGACTCTGGTGTTCCCCGTCGTCCTCCTGCTGGAAAACGTGCTAATGACCAGTCAATTTACCCAAAATTAGTTGAGTTGTTACTTAATAGTTCTGAGTTCTCCTCTAATCTATTACATGACATTACAGGAGGGAAATTAGGGTTCCCTTCATCAACCGATGCCAACTCAACTTGTGGCATGCAGCCCTCAGAAATGAGTTATATTGTCCATGAATTTCGATATGGGTTTCGTGCTGCTCTTAGCGATTTGCAAGGATTTCACATATTTTTGCTTACACTTCACCAAAAGTTAGACAACTCATTACGAGCATTCATGAATATAATAAATAAATTTCCCCTGGGGGAATCTGACAAAGAGGATACAGGAATTCCTGAGTCCCATTTGCAGGGTTCTACCACTCTTCATTGTTTATCCCCACGTTGTAAGGAACGAGCCTCTAGTGATGGTAATATGGATGGTACAGAGTCAGTTCCAAGATCATCATCATCAGGAAATAAAGAAAGCTCAGACTTATCTTCTCCCTTGTCACGAGATAGCTCACAAGGAAAGTTATACAAGGGAAGTGCAGAGCCCATTCATAGCCTTCGTTTGACTGCAAAGCTCCGGGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAGTGCTTAAGAATGAAGCTGTTAAACTCTGCCAGGAGAACAAATTTAATACTGGGTTTTTTGAGGGCAGCGACAGTCATGGAGTTGTTGATGCTTATGAATTGAAGGTGAGACTTGAGCACATTCTTGAAAGGATTGCATTGATATCCGAGGCTGCAAATACAGAACGGCCTTCTTCAGTTACACCTGCCTTGTTTATAGGCGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAGTTACTCATATTTTATGCCTCTGCTCAAATGAAATTGGGCAGTCAGATTCGCAGTTTCCTGATCTATTTGAATACAAAAATTTTTCGATAAGTGATGATGAAGACTCAAACATCAGCAGTATCTTTGAAGAAGCTTCTGATTTTATTGACGGCGTTGAGAGAGAGGGTGGGAAGGTCTTAGTTCATTGTTTTGAAGGGAAAAGCAGGAGTGCCACATTGGTTCTTGCTTACTTGATGCTCAGAAAGAAATACACGCTGGTAAAAGCATGGAATTCTTTGAAACGGGTTCACCGTCGAGCTCAGCCTAATGATGGGTTTGCTAAAACATTATTAGAATTAGATCGAAGAATACACGGAAAGGTTTCCATGGAGTGGCAATCACGAAAACCAACCATGAAAGTTTGCCCAATTTGTGGAAAAAATGCTGGACTGAGCAGTAGCTCACTGAAGCTACATCTGCAGAAATCACACAAGAAGCTATCATCTGGGAGCGTAGACAGCGCAATGACCATGGAAATACAGAAGGCATTGACAGCTCTAAGAATCAGTCGTGGAGGAAGTGTTAGCCCAACCCAGAGGCAATCTCTTCTCATCCTGGATGAATAG 2760 42.75 MEKHHHLQHQEIKDLDLDLGPDESDLAPLPPTVTSRVLHMLGDIAAGPAYRFSQWLELVRKRSGKHRASAFHNRPHPPFDMPFGAEELVNQSINLPAPEQSTETNLWDRLAKASVLDIESSSFSWDRLLSLHRTEHSSSTEHSEDEMNKALEVTVNSGGVVFFALFNQLGYDDNLPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNSSTEWLQIKEAAEKARDIACLEGDEVGEMTCSELLEALEFSRCLFLMSYVHGSPLLESSSAFESREIAEKLAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLLADRMACANMNAFEEALDSAIKRYKPKVITTLQKERRGTLVDNRSSSNSGLISEIPELCDIVESPKSSNLSVKSQISDDTMPCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGFPSSTDANSTCGMQPSEMSYIVHEFRYGFRAALSDLQGFHIFLLTLHQKLDNSLRAFMNIINKFPLGESDKEDTGIPESHLQGSTTLHCLSPRCKERASSDGNMDGTESVPRSSSSGNKESSDLSSPLSRDSSQGKLYKGSAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTPALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDSNISSIFEEASDFIDGVEREGGKVLVHCFEGKSRSATLVLAYLMLRKKYTLVKAWNSLKRVHRRAQPNDGFAKTLLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALRISRGGSVSPTQRQSLLILDE* 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 91324 107838 - CsaV3_1G000110.1 Csa01g00011 514508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00011 919 CDD DSP 693 830 - -
Csa01g00011 919 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 692 836 IPR029021 -
Csa01g00011 919 MobiDBLite consensus disorder prediction 563 596 - -
Csa01g00011 919 ProSiteProfiles Dual specificity protein phosphatase domain profile. 692 837 IPR020422 GO:0006470|GO:0008138
Csa01g00011 919 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 2 918 - -
Csa01g00011 919 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 757 813 IPR000387 GO:0016311|GO:0016791
Csa01g00011 919 SMART dsp_5 692 834 IPR020422 GO:0006470|GO:0008138
Csa01g00011 919 SUPERFAMILY Protein kinase-like (PK-like) 54 430 IPR011009 -
Csa01g00011 919 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 2 918 IPR035010 GO:0004721|GO:0009737|GO:0043622
Csa01g00011 919 Gene3D Protein tyrosine phosphatase superfamily 670 838 IPR029021 -
Csa01g00011 919 Gene3D - 271 442 IPR036940 GO:0016301
Csa01g00011 919 MobiDBLite consensus disorder prediction 555 599 - -
Csa01g00011 919 Pfam Actin-fragmin kinase, catalytic 103 364 IPR015275 -
Csa01g00011 919 Pfam Dual specificity phosphatase, catalytic domain 708 833 IPR000340 GO:0008138|GO:0016311
Csa01g00011 919 ProSitePatterns Tyrosine specific protein phosphatases active site. 779 789 IPR016130 GO:0016311|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00011 K14165 K14165; atypical dual specificity phosphatase [EC:3.1.3.16 3.1.3.48] - csv:101220184 1753.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00011 Csa-Chr1:91324 Csa05g00673 Csa-Chr5:4532432 1.70E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g32 . . . Bda15g00697 Bpe12g00460 . . . . . Cma10g00021 . Car10g00014 . Sed12g2546 . . Bhi02g00621 Tan09g2433 Cmetu02g0933 . Hepe09g0013 . . Cla06g01782 Cam06g1976 Cec06g2025 Cco06g2033 Clacu06g1933 Cmu06g1874 Cre06g2686 . . Cone13ag0255 . . . . . . . . . . . . Bma08g00279 . Cmo10g00018 . . . . . . Cpe18g00937 . . . . . . . . . . . . . . Lsi06g01680 Csa01g00011 Chy02g02701 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa07g01336 . 65 374 Protein tyrosine phosphatase (PTP) family AT1G71860 66.0 1.6e-117 419.5
Csa01g00011 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.4 0.0e+00 1085.1
Csa06g01564 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.7 1.4e-40 162.9
Csa06g02399 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.3 5.1e-70 260.8
Csa05g02758 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.2e-113 406.4
Csa05g00878 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 3.2e-111 398.3
Csa03g03940 . 151 599 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Csa06g01343 . 15 215 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 8.4e-74 273.9
Csa06g02393 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 6.2e-69 257.7
Csa01g03339 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.5e-54 209.9
Csa03g00252 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 7.3e-102 367.5
Csa02g00073 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 4.6e-80 295.0
Csa03g00252 . 38 213 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Csa06g01343 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 5.7e-78 287.3
Csa06g02393 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Csa01g03339 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.9e-57 219.2
Csa01g03339 . 3 201 Protein tyrosine phosphatase (PTP) family AT3G02800 69.7 2.8e-80 295.0
Csa06g01343 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 3.1e-55 211.8
Csa06g02393 . 37 228 Protein tyrosine phosphatase (PTP) family AT3G02800 50.5 8.7e-50 193.7
Csa05g00673 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.6 1.0e-61 235.3
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa07g00734 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Csa06g02964 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 62.6 9.9e-198 686.8
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa06g01286 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 57.6 8.9e-71 263.8
Csa03g00186 . 19 303 Protein tyrosine phosphatase (PTP) family AT2G35320 64.9 1.5e-109 392.9
Csa04g01589 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.5 3.4e-276 947.6
Csa04g01589 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 1.3e-251 865.9
Csa04g01589 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.3 1.8e-183 639.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009525 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 2 1 0 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00011 Csa_Chr01 FPKM 6.412723 8.563992 7.147628 6.895546 4.565782 3.02273 5.183328 12.700804 12.819639 13.72928