Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00018 ATGGGTGTGTCAAAAGATTGGCAACGACAATCTCTGGTGCCAAGCTTTGTGTATTCCCAAACACAAACAGCGGTTAAGAGCTTCCCAATTGAAGCTCCGAAAGAGAAGATAAAGATGTACTCACCGGCATTCTATGCAGCATGCACAACCGGGGGCATTTTGAGCTGTGGACTCACCCACATGTCTGTCACCCCTCTCGATCTCGTCAAGTGCAATATGCAGATCGATCCAGCAAAGTACAAGAATATCTCGTCTGGTTTTGGAATTCTGCTAAAGGAGCAGGGAGTGAAAGGGTTCTTCCGGGGATGGGTGCCAACGTTGCTTGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGATTTTACGAATTCTTCAAGAAGTACTATTCTGATATGGTTGGAGCAGAGAATGCAGTCAAGTACAAAACTTTCATATACCTTGCTGGCTCAGCATCTGCAGAAGTGATTGCGGATATTGCTCTCTGCCCCATGGAGGCCGTCAAAGTTCGTGTCCAAACTCAACCTGGTTTTGCTCGAGGTTTGTCAGATGGGCTTCCAAAGTTTGTCAAGTCTGAGGGCCCTCTTGGGCTCTACAAAGGTCTGGTTCCTCTTTGGGGTCGTCAGATTCCATATACCATGATGAAATTTGCTTCTTTCGAAACAATTGTTGAGATGCTCTACAAGTATGCCATCCCAAGGCCAAAAGAACAGTGTACCAAATCTCTGCAACTTGGAGTAAGCTTTGCCGGGGGGTATGTGGCCGGCGTCCTTTGTGCTGTGGTCTCACACCCAGCTGACAATCTTGTCTCTTTTCTAAACAATGCAAAGGGTGCAACTGCCGGGGATGCTGTCAGGCAGCTAGGTTTATGGGGTCTTTTCACTCGTGGCCTTCCACTTCGGATTGTTATGATTGGAACTCTTACCGGGTCTCAATGGGGAATATATGACGCATTCAAAGTTTTCGTTGGACTGCCAACAACAGGTGGGGCTACACCTGCTCCTGCAGCTAGCAAGTAA 1014 47.83 MGVSKDWQRQSLVPSFVYSQTQTAVKSFPIEAPKEKIKMYSPAFYAACTTGGILSCGLTHMSVTPLDLVKCNMQIDPAKYKNISSGFGILLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDMVGAENAVKYKTFIYLAGSASAEVIADIALCPMEAVKVRVQTQPGFARGLSDGLPKFVKSEGPLGLYKGLVPLWGRQIPYTMMKFASFETIVEMLYKYAIPRPKEQCTKSLQLGVSFAGGYVAGVLCAVVSHPADNLVSFLNNAKGATAGDAVRQLGLWGLFTRGLPLRIVMIGTLTGSQWGIYDAFKVFVGLPTTGGATPAPAASK* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 124097 126120 + CsaV3_1G000180.1 Csa01g00018 514515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00018 337 ProSiteProfiles Solute carrier (Solcar) repeat profile. 43 127 IPR018108 -
Csa01g00018 337 Gene3D Mitochondrial carrier domain 44 321 IPR023395 -
Csa01g00018 337 Pfam Mitochondrial carrier protein 142 228 IPR018108 -
Csa01g00018 337 Pfam Mitochondrial carrier protein 46 130 IPR018108 -
Csa01g00018 337 SUPERFAMILY Mitochondrial carrier 46 316 IPR023395 -
Csa01g00018 337 ProSiteProfiles Solute carrier (Solcar) repeat profile. 140 224 IPR018108 -
Csa01g00018 337 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 19 336 IPR044677 GO:0005315|GO:1990547
Csa01g00018 337 PANTHER PHOSPHATE TRANSPORTER 19 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00018 Csa-Chr1:124097 Csa05g01668 Csa-Chr5:19816552 0 dispersed
Csa01g00018 Csa-Chr1:124097 Csa04g01544 Csa-Chr4:14989952 2.01E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00018 K15102 - csv:101220423 643.269