Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00019 ATGAATAGTAATGCGTGTGGTTGGGAATTATTAGAAGAAACGGCGCCAAACTTACAAACACCCCATAATTATTATCACCACCTTCTTCCACCTCAATTCCAATCAGCAGCTGCTTCTTCCTCAAATTATCAAACTCCCCAGCACCACCACTCCCTCGCGCCTGATCATCACATATATATGCCTTCTTCCCATTCCCACCCTCCATCTGCCGAGGAGGAGGACCCAAATGGAAGTAAGGGGGGCGAGTGCAAGAGGAGATGTTACAACCGAGCAAAAGCAGGAGGAAGATCAGGCTGCAAGAAGAAGATGATGATCAAAACTCAACATGACCCTGCTGACCATGTGAGAGCAAGGAGGGGCCAGGCCACAGACAGTCACAGCCTTGCAGAGAGGGTCAGAAGACAGAAAATCAGCCAAAGGATGAAGGTTTTGCAAACCCTTGTTCCTGGCTGCCACAAGGTAACTGGGAAGGCCTTAATGCTGGATGAAATTATTAACTATGTTCAGTCCCTGCAAAATCAAGTTGAGTTCCTTTCCATGAAGCTTGCTTCTCTTGACCCCGTCCTCCACGACTTTGGAATGGATTTTCCAGAAGTGTTGCTCGTCGGTACACCAGCCTCTGAGATATTGAATGGGAATGGCATGGTGTCACACTCAGAGCATGCAGAATTAGCATACAATAATATGGCACCAATATACAACACATTTCAGGCTACAGGAGGCGGAGGTGGTGGTAGCCCGATCTTAACGCCCGGAAACAGCAGCTTTATCAATCCATCTCCACTTTTCCTTGACCATGGGAATACTTCTCAGCTACATCTCTCATGA 828 47.46 MNSNACGWELLEETAPNLQTPHNYYHHLLPPQFQSAAASSSNYQTPQHHHSLAPDHHIYMPSSHSHPPSAEEEDPNGSKGGECKRRCYNRAKAGGRSGCKKKMMIKTQHDPADHVRARRGQATDSHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLDPVLHDFGMDFPEVLLVGTPASEILNGNGMVSHSEHAELAYNNMAPIYNTFQATGGGGGGSPILTPGNSSFINPSPLFLDHGNTSQLHLS* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 132006 133915 + CsaV3_1G000190.1 Csa01g00019 514516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00019 275 CDD bHLH_AtBPE_like 114 195 - -
Csa01g00019 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 171 IPR011598 GO:0046983
Csa01g00019 275 MobiDBLite consensus disorder prediction 36 84 - -
Csa01g00019 275 Pfam Helix-loop-helix DNA-binding domain 125 172 IPR011598 GO:0046983
Csa01g00019 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 188 IPR036638 GO:0046983
Csa01g00019 275 MobiDBLite consensus disorder prediction 109 129 - -
Csa01g00019 275 Gene3D - 118 191 IPR036638 GO:0046983
Csa01g00019 275 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 69 199 IPR024097 GO:0006355
Csa01g00019 275 SMART finulus 127 177 IPR011598 GO:0046983
Csa01g00019 275 PANTHER BHLH-TRANSCRIPTION FACTOR 69 199 - -
Csa01g00019 275 MobiDBLite consensus disorder prediction 67 84 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00988 Csa01g00019 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00019 Csa-Chr1:132006 Csa07g01563 Csa-Chr7:16047841 3.88E-40 dispersed
Csa01g00019 Csa-Chr1:132006 Csa01g00988 Csa-Chr1:6153304 6.33E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30596 PF00010 HLH 8.00E-07 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00019 - - csv:101208544 541.576