Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00022 ATGGTATTCCACTATATTCCCATATGCATCCAAATACCCTTCACTTTTCTTGCATGCACTATTAATACCCCTCCCTCTCATCTCCCTCTTTTCATTCCCAAATATTGTACTCTTCTTCATCTTCATCTAATAATTAACAATTCTATTTCTAATTCATCCCATCACATGGCCAATGGCAATGGCAATGGCAATGGCAATGATATGGATTTGGAGCCCAAGTCTGGTTCTGACGATCATGATCATGATCACCCCACGGCCATCACCAACCTCCATCTTTGTTATTCCCAGATTATCCTCAGAGTTTTGGCAATTGCCTCCACACTGGCTGCTACCTGGATCATCCTCACCGCCAAGCAATCCGTTCTCATTTTTGGTATCCCTTTTGACGCTCGATACAACGACTCCTCTGCTTTCCAGTTCTTTGCTTTTGCTAACGCTATTGCATCTGCCTTCTGTTTTCTCTCCCTCTGCTTTCTAATTTTCTTATCAACTCGTCCAAGCAGCAACACTAGTACCCCGCTCAATTTCTACATATTTTTCTTCTTTCGTCTCCATGACTTGTTGATGATGGGATTGGTGCTCAGCGGTTGCTCTGCTGCCACCGCCATCGGCTTCGTCGGCAAGTACGGCAACACCCACACGGGCTGGTCCCCCATCTGTAACCATTTTCCCTCCTTTTGTAATCGCGTTACTGCTTCCATTGCCATTTCTTATTTCTCTGTCATTTGCCTTCTCATACTCACCACCCTTTCTCTCCATACCCACCACTAG 771 45.14 MVFHYIPICIQIPFTFLACTINTPPSHLPLFIPKYCTLLHLHLIINNSISNSSHHMANGNGNGNGNDMDLEPKSGSDDHDHDHPTAITNLHLCYSQIILRVLAIASTLAATWIILTAKQSVLIFGIPFDARYNDSSAFQFFAFANAIASAFCFLSLCFLIFLSTRPSSNTSTPLNFYIFFFFRLHDLLMMGLVLSGCSAATAIGFVGKYGNTHTGWSPICNHFPSFCNRVTASIAISYFSVICLLILTTLSLHTHH* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 148053 149750 - CsaV3_1G000220.1 Csa01g00022 514519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00022 256 MobiDBLite consensus disorder prediction 56 80 - -
Csa01g00022 256 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 97 253 IPR006459 -
Csa01g00022 256 Pfam Casparian strip membrane protein domain 95 243 IPR006702 -
Csa01g00022 256 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 81 254 - -
Csa01g00022 256 PANTHER CASP-LIKE PROTEIN 1F1 81 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00022 - - - csv:101220659 348.206
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00022 Csa-Chr1:148053 Csa05g02997 Csa-Chr5:30280539 3.35E-18 dispersed
Csa01g00022 Csa-Chr1:148053 Csa03g01416 Csa-Chr3:10626803 2.85E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g44 . . Bda06g00714 Bda15g00689 . . . Bma12g01092 . . Cma10g00033 . . . Sed09g1602 . . Bhi02g00642 Tan09g2421 Cmetu02g0260 . . . . . . . . . . . . . . Cone19ag0231 . . . . . . . . Bpe07g00903 . . . . Cmo10g00029 . . . . . . Cpe18g00927 . . . . . . . . . . . . . . Lsi06g01669 Csa01g00022 Chy02g02691 Cme02g02098
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013134 2 1 0 1 1 1 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00022 Csa_Chr01 FPKM 11.273889 11.060422 7.743168 7.415775 24.190935 24.967813 24.791126 6.4953 6.00547 7.319569