Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00023 ATGATAGACTTCGCTCGGGTGCAAAAGGAGCTCCAAGAATGCACTAAAGACATTGAGGCTTCTGGTATTAGAGTCACCCCCAAATCCGATAGTCTTTCCCATTTGCTCGGCACCATTCCTGGTCCTATCTCTACTCCGTACGAAGGTGGCATTTTCCAAATTGACATTACATTACCAGATGGGTATCCATTTGAGCCTCCCAAAATGCAGTTTGCTACAAAAGTCTGGCACCCTAATATTAGTAGTCAAAGTGGTGCAATTTGCCTGGACATTTTGAAGGATCAGTGGAGCCCAGCACTTACGTTGAAGACAGCCCTGCTCTCTGTGCAGGCACTGCTGTCTGCTCCTCAGCCTGATGATCCTCAAGATGCTGTCGTGGCACAACAGTATCTTAGAGACTACCAGACTTTTGCTGGCACAGCTCGATATTGGACAGAAACTTTTGCCAAGACGTCATCTCTTGGGGTGGAAGAAAAGGTTCAGAAACTCATGGAGATGGGATTCCCCGAGGCTCAAGTAAGGAGCAGTTTGGAAGCTGTGGGTTGGGATGAAAATTTGGCTTTGGAAAAACTCTGCTCCGGCTAG 585 47.52 MIDFARVQKELQECTKDIEASGIRVTPKSDSLSHLLGTIPGPISTPYEGGIFQIDITLPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLRDYQTFAGTARYWTETFAKTSSLGVEEKVQKLMEMGFPEAQVRSSLEAVGWDENLALEKLCSG* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 152752 156335 + CsaV3_1G000230.1 Csa01g00023 514520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00023 194 SUPERFAMILY UBC-like 6 150 IPR016135 -
Csa01g00023 194 SUPERFAMILY UBA-like 130 194 IPR009060 GO:0005515
Csa01g00023 194 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 150 IPR000608 -
Csa01g00023 194 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Csa01g00023 194 CDD UBA_II_E2_UBC27_like 157 192 IPR041974 -
Csa01g00023 194 SMART uba_6 156 193 IPR015940 -
Csa01g00023 194 SMART ubc_7 5 150 - -
Csa01g00023 194 Pfam Ubiquitin-conjugating enzyme 6 144 IPR000608 -
Csa01g00023 194 CDD UBCc 6 145 IPR000608 -
Csa01g00023 194 Gene3D Ubiquitin Conjugating Enzyme 2 148 IPR016135 -
Csa01g00023 194 Gene3D - 149 194 - -
Csa01g00023 194 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 155 194 IPR015940 -
Csa01g00023 194 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 187 - -
Csa01g00023 194 Pfam UBA/TS-N domain 157 190 IPR015940 -
Csa01g00023 194 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 3 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00023 K04649 HIP2, UBC1; ubiquitin-conjugating enzyme (huntingtin interacting protein 2) [EC:2.3.2.23] - csv:101209270 393.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00023 Csa-Chr1:152752 Csa07g01317 Csa-Chr7:13067239 2.05E-42 dispersed
Csa01g00023 Csa-Chr1:152752 Csa05g00222 Csa-Chr5:1325359 1.19E-42 transposed
Csa01g00023 Csa-Chr1:152752 Csa06g01122 Csa-Chr6:9320179 1.46E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g46 . . . Bda15g00687 Bpe12g00466 . . . . . Cma10g00034 . Car10g00024 . Sed12g2540 . . Bhi02g00643 Tan09g2420 Cmetu02g0270 . . . . Cla06g01771 Cam06g1963 Cec06g2014 Cco06g2021 Clacu06g1921 Cmu06g1862 Cre06g2675 . . Cone13ag0249 Cone19ag0229 . . . . . Blo15g00101 . . . . . Bma08g00271 . Cmo10g00030 . . . . . . . . . . . . . . . . . . . . . Lsi06g01668 Csa01g00023 Chy02g02690 Cme02g02097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009524 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 4 1 1 1 0 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00023 Csa_Chr01 FPKM 44.516045 51.821751 35.350304 39.35268 20.124151 20.32935 19.114208 44.02293 47.336582 41.914585