Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00029 ATGGATTCCTCGTCTCTTAACTCCCCGGAGCTGATGAATTTTATCAATGAAGAGAAGCAAAGAGCTATGGTTGCTGAGATGGTGGCTAAGCTTACCAGTGTCTGTTGGGACAAGTGCATAACTGGAACACCAGGGAGTAAGTTCAGCTCCAGTGAATCCAACTGTCTATCCAACTGTGCCCAGCGCTATATGGATATGAGCATCATCATTATGAAACGATTTCAAAATAGTTAA 234 43.16 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQNS* 78
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 180793 182032 + CsaV3_1G000290.1 Csa01g00029 514526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00029 77 Gene3D Mitochondrial import inner membrane translocase subunit tim13 like domains 2 77 IPR035427 -
Csa01g00029 77 PANTHER TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG 1 76 IPR039238 GO:0005758
Csa01g00029 77 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM8-LIKE 1 76 - -
Csa01g00029 77 SUPERFAMILY Tim10-like 20 76 IPR035427 -
Csa01g00029 77 Pfam Tim10/DDP family zinc finger 13 76 IPR004217 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00029 K17780 TIM8; mitochondrial import inner membrane translocase subunit TIM8 - csv:101209758 157.918
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00769 Csa01g00029 CCT
Csa01g00769 Csa01g00029 ECH
Csa01g00029 Csa01g00769 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00147 Csa-Chr5:813425 Csa01g00029 Csa-Chr1:180793 2.66E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g59 . . . . . Bpe13g00191 Bma06g00277 . . . Cma10g00038 Cma11g00015 Car10g00028 . Sed01g3768 . . Bhi02g00651 Tan09g2409 Cmetu09g1954 . Hepe09g0026 . . Cla06g01766 . . . Clacu06g1915 Cmu06g1856 Cre06g2669 . . Cone13ag0245 . . Csa01g00769 . . . . . . . . . . . . Cmo11g00014 . . . . . . . . . . . . . . . . . . . . . Csa01g00029 . Cme02g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002836 0 1 0 3 1 1 2 2 2 1 3 2 4 2 1 2 2 1 2 2 2 2 2 0 2 2 3 1 1 3 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00029 Csa_Chr01 FPKM 0.15736 0.272181 10.999632 11.682464 92.65712 95.413788 88.088898 42.184654 41.280067 38.980953